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The map label for this gene is rfbC [H]

Identifier: 123968939

GI number: 123968939

Start: 1177310

End: 1177846

Strand: Reverse

Name: rfbC [H]

Synonym: A9601_14061

Alternate gene names: 123968939

Gene position: 1177846-1177310 (Counterclockwise)

Preceding gene: 123968940

Following gene: 123968938

Centisome position: 70.53

GC content: 31.47

Gene sequence:

>537_bases
ATGCTAAAGCCTACAAGTATTGACGGAGTTTTTGAAATTCAAACAGATATTTTTAATGATCAAAGAGGTTCCTTTATTAA
TTTTTTTAGATCATCAGAAAAAGCTTTTAAAAATTGTTGGTTTGATAAAGAAATAAAACAAGTTAATTTGAGTAAAAATA
GTTTTAAAGGTACATTAAGAGGTTTGCATTATCAATTAAATCCCTACGCAGAAAAGAAAATGGTTAGATGTATAAAAGGT
TGTGTTTGGGATGTTGCTGTTGATTTGCGAGAAGATTCTTCAACATATCTTTCATGGCATTGTGTAGAGTTAAGCCCAAA
ATTTGCAAATGCCATTGTAATTCCAGAAGGTTGCGCTCATGGATTTCAAGTTCTTGAAGAGGATAGTGAGATATTATATT
TGCATTCTGGGGATTGGATTAAGGAATCTGAAACTGGTATAAGATGGAATGATCCTCAAATAGCAATTTCATGGCCTTTG
CAGGCTGTTAATTTAAGTGAAAGAGATCAAAATTTGCCTTATTTATCTGAGAAATGA

Upstream 100 bases:

>100_bases
ATTTTGATTTTATGACCTAAGGTTATAAAATCTAAGAAGTTTAAATGCTTTAAATGATAATATTAATCTGCAATTCAAAG
CAATATAAATAATGGCTCAT

Downstream 100 bases:

>100_bases
ATCTTAAATGTAGACATTGTGGAAAAACTCTAAATCATGAAGTTATTGATTTGGGCAACCAGCCTCCAAGTAATGCATAT
TTGGATAAAAATCAAATATT

Product: dTDP-4-dehydrorhamnose 3,5-epimerase

Products: NA

Alternate protein names: Thymidine diphospho-4-keto-rhamnose 3,5-epimerase; dTDP-4-keto-6-deoxyglucose 3,5-epimerase; dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; dTDP-L-rhamnose synthase [H]

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLKPTSIDGVFEIQTDIFNDQRGSFINFFRSSEKAFKNCWFDKEIKQVNLSKNSFKGTLRGLHYQLNPYAEKKMVRCIKG
CVWDVAVDLREDSSTYLSWHCVELSPKFANAIVIPEGCAHGFQVLEEDSEILYLHSGDWIKESETGIRWNDPQIAISWPL
QAVNLSERDQNLPYLSEK

Sequences:

>Translated_178_residues
MLKPTSIDGVFEIQTDIFNDQRGSFINFFRSSEKAFKNCWFDKEIKQVNLSKNSFKGTLRGLHYQLNPYAEKKMVRCIKG
CVWDVAVDLREDSSTYLSWHCVELSPKFANAIVIPEGCAHGFQVLEEDSEILYLHSGDWIKESETGIRWNDPQIAISWPL
QAVNLSERDQNLPYLSEK
>Mature_178_residues
MLKPTSIDGVFEIQTDIFNDQRGSFINFFRSSEKAFKNCWFDKEIKQVNLSKNSFKGTLRGLHYQLNPYAEKKMVRCIKG
CVWDVAVDLREDSSTYLSWHCVELSPKFANAIVIPEGCAHGFQVLEEDSEILYLHSGDWIKESETGIRWNDPQIAISWPL
QAVNLSERDQNLPYLSEK

Specific function: Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose [H]

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family [H]

Homologues:

Organism=Escherichia coli, GI1788350, Length=175, Percent_Identity=40.5714285714286, Blast_Score=113, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17550412, Length=168, Percent_Identity=37.5, Blast_Score=93, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: =5.1.3.13 [H]

Molecular weight: Translated: 20569; Mature: 20569

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKPTSIDGVFEIQTDIFNDQRGSFINFFRSSEKAFKNCWFDKEIKQVNLSKNSFKGTLR
CCCCCCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHEECCCCCHHHHHHH
GLHYQLNPYAEKKMVRCIKGCVWDVAVDLREDSSTYLSWHCVELSPKFANAIVIPEGCAH
CEEEEECCHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEEEEEECCCCCCEEEECCCCHH
GFQVLEEDSEILYLHSGDWIKESETGIRWNDPQIAISWPLQAVNLSERDQNLPYLSEK
HHHHHCCCCCEEEEECCCCCCCCCCCCEECCCEEEEECCEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKPTSIDGVFEIQTDIFNDQRGSFINFFRSSEKAFKNCWFDKEIKQVNLSKNSFKGTLR
CCCCCCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHEECCCCCHHHHHHH
GLHYQLNPYAEKKMVRCIKGCVWDVAVDLREDSSTYLSWHCVELSPKFANAIVIPEGCAH
CEEEEECCHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEEEEEECCCCCCEEEECCCCHH
GFQVLEEDSEILYLHSGDWIKESETGIRWNDPQIAISWPLQAVNLSERDQNLPYLSEK
HHHHHCCCCCEEEEECCCCCCCCCCCCEECCCEEEEECCEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8170390; 8157605; 12384590; 12704152 [H]