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The map label for this gene is ycf4 [H]

Identifier: 123968866

GI number: 123968866

Start: 1107886

End: 1108443

Strand: Reverse

Name: ycf4 [H]

Synonym: A9601_13331

Alternate gene names: 123968866

Gene position: 1108443-1107886 (Counterclockwise)

Preceding gene: 123968869

Following gene: 123968865

Centisome position: 66.38

GC content: 31.36

Gene sequence:

>558_bases
ATGAATTCAGACCTCACGTCATTCGATAAAATCGAACAAAAAATTGGTGGATCAAGAAAAATTTCAAATTATATTATTGG
AGGGATGTTGACTATAGGAGGTATTGGTTTTCTTTTGGCCTCTATATCTAGCTACACAGGAAGGGATTTATTACCTTTAG
GAAATCCTTCAACTTTGTTGTTTATACCTCAAGGAATAATAATGGGAGCATACGGAGTAATAGCTAATTTATTAAATTTT
TACTTGTGGTATTTGGTTTACATAAACTTTGGTTCAGGAAGTAATTATTTTGATAAATCATCAAAATCTGTAGAAATAAA
AAGAAAGGGATTATTTAAAGATGTTGAAGTTAAATTAAATTTTGATGAAATTAAATCTGTAAAGTTGGATATAAGTGAGG
GATTTAATCCTAGAAGAAGAATTGCTCTAGTATTAAAAGGTAGAAAAAAACCTCTCCCTCTAAGCGGTGCGGGTGAACTA
AAACCATTGCTTCAGGTTGAAGAAGAAGGAGCTCGTCTAGCTAAATTTTTAGATGTTAATTTGGAGGGCCTAAAATAA

Upstream 100 bases:

>100_bases
ATGCCTTGTAAAGCTTTCCTGACTTTTTTATTAAAAATTAGGTAAGAATACTCCCTTAGTTTGTTAAATTATCTGAATTA
GGCTCTAAAAAAAGATAAAA

Downstream 100 bases:

>100_bases
AAAAAAAATATTTTTTAAAAACATTATCTCTTATACAGGTTTTGTTTTTGGTTCAAGCATGTAGTTATAAAAGTAAGATT
GATCCAAATTATTACTGCCA

Product: photosystem I assembly protein Ycf4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MNSDLTSFDKIEQKIGGSRKISNYIIGGMLTIGGIGFLLASISSYTGRDLLPLGNPSTLLFIPQGIIMGAYGVIANLLNF
YLWYLVYINFGSGSNYFDKSSKSVEIKRKGLFKDVEVKLNFDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGEL
KPLLQVEEEGARLAKFLDVNLEGLK

Sequences:

>Translated_185_residues
MNSDLTSFDKIEQKIGGSRKISNYIIGGMLTIGGIGFLLASISSYTGRDLLPLGNPSTLLFIPQGIIMGAYGVIANLLNF
YLWYLVYINFGSGSNYFDKSSKSVEIKRKGLFKDVEVKLNFDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGEL
KPLLQVEEEGARLAKFLDVNLEGLK
>Mature_185_residues
MNSDLTSFDKIEQKIGGSRKISNYIIGGMLTIGGIGFLLASISSYTGRDLLPLGNPSTLLFIPQGIIMGAYGVIANLLNF
YLWYLVYINFGSGSNYFDKSSKSVEIKRKGLFKDVEVKLNFDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGEL
KPLLQVEEEGARLAKFLDVNLEGLK

Specific function: Seems to be required for the assembly of the photosystem I complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003359
- ProDom:   PD003698 [H]

Pfam domain/function: PF02392 Ycf4 [H]

EC number: NA

Molecular weight: Translated: 20422; Mature: 20422

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSDLTSFDKIEQKIGGSRKISNYIIGGMLTIGGIGFLLASISSYTGRDLLPLGNPSTLL
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
FIPQGIIMGAYGVIANLLNFYLWYLVYINFGSGSNYFDKSSKSVEIKRKGLFKDVEVKLN
EECCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEHHCCCCEEEEEEEC
FDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGELKPLLQVEEEGARLAKFLDVN
HHHHHEEEEECCCCCCHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
LEGLK
CCCCC
>Mature Secondary Structure
MNSDLTSFDKIEQKIGGSRKISNYIIGGMLTIGGIGFLLASISSYTGRDLLPLGNPSTLL
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
FIPQGIIMGAYGVIANLLNFYLWYLVYINFGSGSNYFDKSSKSVEIKRKGLFKDVEVKLN
EECCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEHHCCCCEEEEEEEC
FDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGELKPLLQVEEEGARLAKFLDVN
HHHHHEEEEECCCCCCHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
LEGLK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA