Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 123968767

GI number: 123968767

Start: 1052148

End: 1052702

Strand: Reverse

Name: rpoE [C]

Synonym: A9601_12341

Alternate gene names: 123968767

Gene position: 1052702-1052148 (Counterclockwise)

Preceding gene: 123968768

Following gene: 123968766

Centisome position: 63.04

GC content: 32.07

Gene sequence:

>555_bases
ATGTCTACAGACCTTAGTGCTTATATGCTCAAAGTCGCAAAGGGTGATAAGGCAGCTTTCCGATTCATTGCAAATTCTTT
AGGATACAAAATGCATGCCACAGCAATTAAGATTTTAGGTTCATCGCATTCTGAGGATGCAGAAGATGTAGTACAAATTT
CTTTAATTAAAGTATGGCAATCAGCTCCTAATTGGGTAAATAAAGGAAGTGTAGAAGGGTATATTCATAAAATCGTTTTT
TCAACTTGCATTGACTTTTTTAGAAGATATAAAAGTGCTGAAGAATTTAAAGATAATTATTCCAACTTAGAAATAATAAA
TAACAACTATACAACTAGTGAATTGAGAAAAATGCTTTTAAAAAATATTCAAAAACTTCCTCAAGATCAGGGAGAAGCCA
TTTTGCTACATTACTTTTCTGGCTATAAACAGAGAGAAGTGTCTAGGATCTTAAAAAAAAGTGACAAGGCAACTGAAAGC
CTCATTATTCGCGCTCGCAAAAAGTTAAAAACTATTTTGCCAAAAAATATTTTGGAGGAATTTTTGGATGTCTAA

Upstream 100 bases:

>100_bases
TAAGAATGCTGATGGCAAGTTATCAAAAAAAGAACTACGAGCAGTTAAGCAAGAAATGAAAAAAAGGATATATAAATTTA
GAAATGAAGGGAATTAAAGA

Downstream 100 bases:

>100_bases
ATTACAAAAGGAACGTCTTAATCAAATGATTGAGAATGCACTTTCTTATAAACAAGAAGTAAAAAACATTAAATCTAATT
CTTTACATAAAAGGCTTAAG

Product: hypothetical protein

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSTDLSAYMLKVAKGDKAAFRFIANSLGYKMHATAIKILGSSHSEDAEDVVQISLIKVWQSAPNWVNKGSVEGYIHKIVF
STCIDFFRRYKSAEEFKDNYSNLEIINNNYTTSELRKMLLKNIQKLPQDQGEAILLHYFSGYKQREVSRILKKSDKATES
LIIRARKKLKTILPKNILEEFLDV

Sequences:

>Translated_184_residues
MSTDLSAYMLKVAKGDKAAFRFIANSLGYKMHATAIKILGSSHSEDAEDVVQISLIKVWQSAPNWVNKGSVEGYIHKIVF
STCIDFFRRYKSAEEFKDNYSNLEIINNNYTTSELRKMLLKNIQKLPQDQGEAILLHYFSGYKQREVSRILKKSDKATES
LIIRARKKLKTILPKNILEEFLDV
>Mature_183_residues
STDLSAYMLKVAKGDKAAFRFIANSLGYKMHATAIKILGSSHSEDAEDVVQISLIKVWQSAPNWVNKGSVEGYIHKIVFS
TCIDFFRRYKSAEEFKDNYSNLEIINNNYTTSELRKMLLKNIQKLPQDQGEAILLHYFSGYKQREVSRILKKSDKATESL
IIRARKKLKTILPKNILEEFLDV

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21142; Mature: 21010

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDLSAYMLKVAKGDKAAFRFIANSLGYKMHATAIKILGSSHSEDAEDVVQISLIKVWQ
CCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
SAPNWVNKGSVEGYIHKIVFSTCIDFFRRYKSAEEFKDNYSNLEIINNNYTTSELRKMLL
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCHHHHHHHHH
KNIQKLPQDQGEAILLHYFSGYKQREVSRILKKSDKATESLIIRARKKLKTILPKNILEE
HHHHHCCCCCCCEEEEHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH
FLDV
HHCC
>Mature Secondary Structure 
STDLSAYMLKVAKGDKAAFRFIANSLGYKMHATAIKILGSSHSEDAEDVVQISLIKVWQ
CCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
SAPNWVNKGSVEGYIHKIVFSTCIDFFRRYKSAEEFKDNYSNLEIINNNYTTSELRKMLL
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCHHHHHHHHH
KNIQKLPQDQGEAILLHYFSGYKQREVSRILKKSDKATESLIIRARKKLKTILPKNILEE
HHHHHCCCCCCCEEEEHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH
FLDV
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA