BacMap

Definition	Prochlorococcus marinus str. AS9601, complete genome.
Accession	NC_008816
Length	1,669,886

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The map label for this gene is srmB [H]

Identifier: 123968740

GI number: 123968740

Start: 1022636

End: 1024417

Strand: Reverse

Name: srmB [H]

Synonym: A9601_12071

Alternate gene names: 123968740

Gene position: 1024417-1022636 (Counterclockwise)

Preceding gene: 123968741

Following gene: 123968739

Centisome position: 61.35

GC content: 29.69

Gene sequence:

>1782_bases
ATGGCTTTTAAAAAAGATAGTAACTCTCTTGGTAGTGAGCAGGAGAATTTTCATAATGAAGATTCTCCCCTACTAGAGTC
TAAGAACTTAGAAAACAAAAAAGAAATTGAATCTCAATTATTGGAAGTATCGAAAGAAAATGATAATGAGAATGGATTTC
TCGATTTTGGGTTTAATCAATCAATCTTAAACTCGTTAATAAATAAAGGATATAAAAATCCAACTCCCATCCAAAAAGCT
GCAATTCCCGAACTAATGTTAGGTAGGGATTTACTGGGCCAAGCACAAACAGGAACAGGAAAGACTGCAGCTTTCGCATT
ACCATTAATAGAAAAACTTACAGATAATAAAGAATTAAATGCCAAGGTTTTAGTTATGACTCCTACAAGAGAATTAGCAA
CTCAAGTGGCAGAATCTTTTAAAAGTTATAGTTCTGAATCTAGTAATTTTAAGACGGTTGCAATATATGGAGGCACCGAC
TATCGAAATCAAATTTCTGCATTGAAAAGAAAAGTTGACGTAGTAGTTGGTACACCAGGCCGAATAATGGATCATATAAG
ACAGGGGACTTTTAAAATTAAAGATATAAATTGTCTTGTTTTAGATGAGGCAGATGAAATGTTAAATATGGGTTTTCTTG
AGGATATTGAATGGATAATAGATCAACTTCCGGAAAATAAGCAAATGGTATTGTTTTCAGCAACAATGCCTAGTGAGATA
AGAAATATAGCAAAAAAATATCTAAATGATCCCGCCGAAATATTAATCAAAAGTGTCAAAAAAGAAACTCAATTAATTTC
GCAAAAATTTCTATATGTACAAAGGCATCATAAGTTAGATGCTTTAAAAAGAATACTAGAACTTAATAACGAGGGAGTAA
TTATTTTTGTGAGGACAAAACTACTTACTACTTCAATAGCTGAAGCTTTAGAGAATTCAGGCCATACTGTGGCAGTACTT
AATGGAGATATACCTCAAAATCAAAGAGAAAATACTGTAGATAGATTGAAAAAAGGATTTATTAATATCCTTGTTGCAAC
TGATGTCGCAGCTAGAGGATTAGATGTTGAGAGGATAAAACTTGTTGTTAATTACGATTTTCCTTTTGACAAGGAAACAT
ATACTCATAGAATTGGAAGAACTGGAAGGGCAGGCAGATCTGGAGAAGCAATTTTATTTGTTAATCAAAGAGAAAAACAT
TTTCTAAGAAACTTAGAAAACTCAACAAGAACAAAGATTGAAGAAATTAACATACCAAGTAATAAAATAATAAATGAAAA
AAGGATGGAGAAACTTATAGATAATGTTAATGAGAGTTTTTTAGCTAAAGATGAAAATGAAGAAAATAAAGCTTTGATTA
TTGATGTACTAGATAATTTAAAAGAAAAATACTCTATGGATGAATCAAATATTGCAATGGCGGCGATTAATTTAGTAATA
GGTAATAAATCATTTTTTGTTGATGAAGATGATTCTTGGATTAATAAACAAAATAATACTGATCGAAATAGATCAAATAG
AAATAGTAATAATCGTATGAGAAATTCAAATAGAAGAAATAATTATCAAAATGATTCTTTTGAAACCTATAAATTTAACT
TTGGTAAATTTGATGGAGTTAGAGTTGCAAATATTATATCCTCAATCTGTAATTCAACTAATATAAATGGTAGATCCATA
GGTAAGATACAGATTTTTAATGATTACAGTTTGGTAGATTTACCCAGAGATCTGCATAGAGAAACTAAAAATAAATTAAA
AAAAATTAAACTCAGAAACTAG

Upstream 100 bases:

>100_bases
GATGTTAGATTAATAACTCGGCTCTGCAAGGCTAATCAACAATTTAAGTCAATTTAGATATTTGTTGAATGCCTAATCAG
AAGATTATTAGGCATTTAAA

Downstream 100 bases:

>100_bases
TTATAGAGAATGAAAGCTAGCAAATATAATTTCTTTATTTTTGTGAATCTGATAATACTATTCAACTCCTTTAATAGTTA
TTATTTAGCTCAAACGAAAC

Product: putative ATP-dependent RNA helicase

Products: NA

Alternate protein names: ATP-dependent RNA helicase deaD homolog [H]

Number of amino acids: Translated: 593; Mature: 592

Protein sequence:

>593_residues
MAFKKDSNSLGSEQENFHNEDSPLLESKNLENKKEIESQLLEVSKENDNENGFLDFGFNQSILNSLINKGYKNPTPIQKA
AIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTDNKELNAKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTD
YRNQISALKRKVDVVVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSATMPSEI
RNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNEGVIIFVRTKLLTTSIAEALENSGHTVAVL
NGDIPQNQRENTVDRLKKGFINILVATDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKH
FLRNLENSTRTKIEEINIPSNKIINEKRMEKLIDNVNESFLAKDENEENKALIIDVLDNLKEKYSMDESNIAMAAINLVI
GNKSFFVDEDDSWINKQNNTDRNRSNRNSNNRMRNSNRRNNYQNDSFETYKFNFGKFDGVRVANIISSICNSTNINGRSI
GKIQIFNDYSLVDLPRDLHRETKNKLKKIKLRN

Sequences:

>Translated_593_residues
MAFKKDSNSLGSEQENFHNEDSPLLESKNLENKKEIESQLLEVSKENDNENGFLDFGFNQSILNSLINKGYKNPTPIQKA
AIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTDNKELNAKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTD
YRNQISALKRKVDVVVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSATMPSEI
RNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNEGVIIFVRTKLLTTSIAEALENSGHTVAVL
NGDIPQNQRENTVDRLKKGFINILVATDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKH
FLRNLENSTRTKIEEINIPSNKIINEKRMEKLIDNVNESFLAKDENEENKALIIDVLDNLKEKYSMDESNIAMAAINLVI
GNKSFFVDEDDSWINKQNNTDRNRSNRNSNNRMRNSNRRNNYQNDSFETYKFNFGKFDGVRVANIISSICNSTNINGRSI
GKIQIFNDYSLVDLPRDLHRETKNKLKKIKLRN
>Mature_592_residues
AFKKDSNSLGSEQENFHNEDSPLLESKNLENKKEIESQLLEVSKENDNENGFLDFGFNQSILNSLINKGYKNPTPIQKAA
IPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTDNKELNAKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDY
RNQISALKRKVDVVVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSATMPSEIR
NIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNEGVIIFVRTKLLTTSIAEALENSGHTVAVLN
GDIPQNQRENTVDRLKKGFINILVATDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHF
LRNLENSTRTKIEEINIPSNKIINEKRMEKLIDNVNESFLAKDENEENKALIIDVLDNLKEKYSMDESNIAMAAINLVIG
NKSFFVDEDDSWINKQNNTDRNRSNRNSNNRMRNSNRRNNYQNDSFETYKFNFGKFDGVRVANIISSICNSTNINGRSIG
KIQIFNDYSLVDLPRDLHRETKNKLKKIKLRN

Specific function: Has a helix-destabilizing activity [H]

COG id: COG0513

COG function: function code LKJ; Superfamily II DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI7661920, Length=391, Percent_Identity=37.5959079283887, Blast_Score=264, Evalue=2e-70,
Organism=Homo sapiens, GI13129006, Length=444, Percent_Identity=35.1351351351351, Blast_Score=259, Evalue=3e-69,
Organism=Homo sapiens, GI45446747, Length=375, Percent_Identity=36, Blast_Score=255, Evalue=1e-67,
Organism=Homo sapiens, GI45446743, Length=375, Percent_Identity=36, Blast_Score=255, Evalue=1e-67,
Organism=Homo sapiens, GI50659095, Length=439, Percent_Identity=36.2186788154898, Blast_Score=253, Evalue=2e-67,
Organism=Homo sapiens, GI224593278, Length=463, Percent_Identity=32.829373650108, Blast_Score=252, Evalue=7e-67,
Organism=Homo sapiens, GI20149629, Length=364, Percent_Identity=36.5384615384615, Blast_Score=246, Evalue=4e-65,
Organism=Homo sapiens, GI31542656, Length=423, Percent_Identity=34.9881796690307, Blast_Score=244, Evalue=1e-64,
Organism=Homo sapiens, GI41327773, Length=358, Percent_Identity=37.4301675977654, Blast_Score=244, Evalue=2e-64,
Organism=Homo sapiens, GI164664518, Length=376, Percent_Identity=35.9042553191489, Blast_Score=241, Evalue=1e-63,
Organism=Homo sapiens, GI41327771, Length=391, Percent_Identity=35.0383631713555, Blast_Score=239, Evalue=4e-63,
Organism=Homo sapiens, GI148613856, Length=450, Percent_Identity=34, Blast_Score=238, Evalue=1e-62,
Organism=Homo sapiens, GI38201710, Length=450, Percent_Identity=34, Blast_Score=238, Evalue=1e-62,
Organism=Homo sapiens, GI301171467, Length=376, Percent_Identity=36.1702127659575, Blast_Score=233, Evalue=5e-61,
Organism=Homo sapiens, GI301171475, Length=376, Percent_Identity=36.1702127659575, Blast_Score=233, Evalue=5e-61,
Organism=Homo sapiens, GI87196351, Length=376, Percent_Identity=36.1702127659575, Blast_Score=233, Evalue=6e-61,
Organism=Homo sapiens, GI169881239, Length=376, Percent_Identity=36.436170212766, Blast_Score=231, Evalue=2e-60,
Organism=Homo sapiens, GI13514809, Length=376, Percent_Identity=36.436170212766, Blast_Score=231, Evalue=2e-60,
Organism=Homo sapiens, GI188035877, Length=347, Percent_Identity=36.8876080691643, Blast_Score=226, Evalue=6e-59,
Organism=Homo sapiens, GI83700235, Length=380, Percent_Identity=37.8947368421053, Blast_Score=224, Evalue=1e-58,
Organism=Homo sapiens, GI4758112, Length=354, Percent_Identity=35.0282485875706, Blast_Score=224, Evalue=2e-58,
Organism=Homo sapiens, GI18375623, Length=354, Percent_Identity=35.0282485875706, Blast_Score=224, Evalue=2e-58,
Organism=Homo sapiens, GI4503529, Length=384, Percent_Identity=37.5, Blast_Score=224, Evalue=2e-58,
Organism=Homo sapiens, GI222352149, Length=344, Percent_Identity=36.9186046511628, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI262118318, Length=384, Percent_Identity=35.9375, Blast_Score=223, Evalue=4e-58,
Organism=Homo sapiens, GI216548263, Length=384, Percent_Identity=35.9375, Blast_Score=223, Evalue=5e-58,
Organism=Homo sapiens, GI13518015, Length=384, Percent_Identity=35.9375, Blast_Score=222, Evalue=7e-58,
Organism=Homo sapiens, GI262231852, Length=384, Percent_Identity=35.9375, Blast_Score=222, Evalue=7e-58,
Organism=Homo sapiens, GI21040371, Length=356, Percent_Identity=34.8314606741573, Blast_Score=222, Evalue=8e-58,
Organism=Homo sapiens, GI4758138, Length=393, Percent_Identity=33.587786259542, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI51094101, Length=365, Percent_Identity=33.6986301369863, Blast_Score=221, Evalue=2e-57,
Organism=Homo sapiens, GI21071032, Length=356, Percent_Identity=35.6741573033708, Blast_Score=221, Evalue=2e-57,
Organism=Homo sapiens, GI164419743, Length=365, Percent_Identity=33.6986301369863, Blast_Score=221, Evalue=2e-57,
Organism=Homo sapiens, GI41327776, Length=363, Percent_Identity=31.9559228650138, Blast_Score=211, Evalue=2e-54,
Organism=Homo sapiens, GI55749865, Length=345, Percent_Identity=33.6231884057971, Blast_Score=205, Evalue=1e-52,
Organism=Homo sapiens, GI38327634, Length=442, Percent_Identity=32.1266968325792, Blast_Score=194, Evalue=2e-49,
Organism=Homo sapiens, GI13514831, Length=445, Percent_Identity=29.8876404494382, Blast_Score=193, Evalue=4e-49,
Organism=Homo sapiens, GI256223453, Length=395, Percent_Identity=31.3924050632911, Blast_Score=193, Evalue=5e-49,
Organism=Homo sapiens, GI38569505, Length=362, Percent_Identity=31.4917127071823, Blast_Score=189, Evalue=6e-48,
Organism=Homo sapiens, GI38569503, Length=362, Percent_Identity=31.4917127071823, Blast_Score=189, Evalue=7e-48,
Organism=Homo sapiens, GI8922886, Length=387, Percent_Identity=33.0749354005168, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI6005743, Length=387, Percent_Identity=33.3333333333333, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI62241022, Length=370, Percent_Identity=34.3243243243243, Blast_Score=184, Evalue=2e-46,
Organism=Homo sapiens, GI9506931, Length=405, Percent_Identity=30.3703703703704, Blast_Score=179, Evalue=7e-45,
Organism=Homo sapiens, GI41327779, Length=384, Percent_Identity=29.1666666666667, Blast_Score=179, Evalue=8e-45,
Organism=Homo sapiens, GI62241024, Length=353, Percent_Identity=33.9943342776204, Blast_Score=179, Evalue=8e-45,
Organism=Homo sapiens, GI164419732, Length=373, Percent_Identity=32.7077747989276, Blast_Score=175, Evalue=9e-44,
Organism=Homo sapiens, GI17505907, Length=436, Percent_Identity=27.0642201834862, Blast_Score=149, Evalue=6e-36,
Organism=Homo sapiens, GI154759257, Length=456, Percent_Identity=27.1929824561404, Blast_Score=145, Evalue=1e-34,
Organism=Homo sapiens, GI256773275, Length=383, Percent_Identity=29.5039164490862, Blast_Score=140, Evalue=3e-33,
Organism=Homo sapiens, GI4826686, Length=338, Percent_Identity=28.9940828402367, Blast_Score=140, Evalue=4e-33,
Organism=Homo sapiens, GI9966805, Length=311, Percent_Identity=27.6527331189711, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI20336298, Length=219, Percent_Identity=31.0502283105023, Blast_Score=107, Evalue=3e-23,
Organism=Escherichia coli, GI87082221, Length=552, Percent_Identity=42.3913043478261, Blast_Score=438, Evalue=1e-124,
Organism=Escherichia coli, GI1787016, Length=375, Percent_Identity=40.5333333333333, Blast_Score=287, Evalue=2e-78,
Organism=Escherichia coli, GI1787605, Length=409, Percent_Identity=36.1858190709046, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI1790214, Length=358, Percent_Identity=38.8268156424581, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1788930, Length=377, Percent_Identity=37.4005305039788, Blast_Score=227, Evalue=2e-60,
Organism=Escherichia coli, GI48994977, Length=365, Percent_Identity=22.7397260273973, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17555296, Length=399, Percent_Identity=35.3383458646617, Blast_Score=258, Evalue=9e-69,
Organism=Caenorhabditis elegans, GI71995724, Length=399, Percent_Identity=37.0927318295739, Blast_Score=257, Evalue=1e-68,
Organism=Caenorhabditis elegans, GI17507121, Length=394, Percent_Identity=36.5482233502538, Blast_Score=255, Evalue=4e-68,
Organism=Caenorhabditis elegans, GI71987143, Length=366, Percent_Identity=36.8852459016393, Blast_Score=255, Evalue=5e-68,
Organism=Caenorhabditis elegans, GI17510309, Length=417, Percent_Identity=36.6906474820144, Blast_Score=245, Evalue=5e-65,
Organism=Caenorhabditis elegans, GI17510307, Length=417, Percent_Identity=36.6906474820144, Blast_Score=245, Evalue=5e-65,
Organism=Caenorhabditis elegans, GI71995514, Length=417, Percent_Identity=36.6906474820144, Blast_Score=244, Evalue=9e-65,
Organism=Caenorhabditis elegans, GI32565321, Length=373, Percent_Identity=37.2654155495979, Blast_Score=244, Evalue=1e-64,
Organism=Caenorhabditis elegans, GI86570094, Length=352, Percent_Identity=39.4886363636364, Blast_Score=243, Evalue=2e-64,
Organism=Caenorhabditis elegans, GI17552114, Length=396, Percent_Identity=34.3434343434343, Blast_Score=239, Evalue=3e-63,
Organism=Caenorhabditis elegans, GI71995718, Length=376, Percent_Identity=35.9042553191489, Blast_Score=235, Evalue=6e-62,
Organism=Caenorhabditis elegans, GI17510559, Length=501, Percent_Identity=30.3393213572854, Blast_Score=234, Evalue=7e-62,
Organism=Caenorhabditis elegans, GI115533224, Length=373, Percent_Identity=37.5335120643432, Blast_Score=232, Evalue=3e-61,
Organism=Caenorhabditis elegans, GI17537549, Length=356, Percent_Identity=36.5168539325843, Blast_Score=232, Evalue=4e-61,
Organism=Caenorhabditis elegans, GI17552642, Length=371, Percent_Identity=37.7358490566038, Blast_Score=230, Evalue=1e-60,
Organism=Caenorhabditis elegans, GI71999646, Length=364, Percent_Identity=30.7692307692308, Blast_Score=214, Evalue=1e-55,
Organism=Caenorhabditis elegans, GI71999644, Length=364, Percent_Identity=30.7692307692308, Blast_Score=213, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI115532548, Length=418, Percent_Identity=33.0143540669856, Blast_Score=211, Evalue=8e-55,
Organism=Caenorhabditis elegans, GI115532546, Length=389, Percent_Identity=33.6760925449871, Blast_Score=210, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17507877, Length=371, Percent_Identity=32.0754716981132, Blast_Score=206, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI71982858, Length=353, Percent_Identity=32.0113314447592, Blast_Score=206, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI17507881, Length=415, Percent_Identity=32.0481927710843, Blast_Score=205, Evalue=6e-53,
Organism=Caenorhabditis elegans, GI17507945, Length=380, Percent_Identity=34.7368421052632, Blast_Score=204, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17507879, Length=371, Percent_Identity=31.266846361186, Blast_Score=198, Evalue=8e-51,
Organism=Caenorhabditis elegans, GI193206561, Length=345, Percent_Identity=32.7536231884058, Blast_Score=197, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17509811, Length=379, Percent_Identity=32.1899736147757, Blast_Score=192, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI17536099, Length=405, Percent_Identity=33.5802469135802, Blast_Score=180, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17536101, Length=405, Percent_Identity=33.5802469135802, Blast_Score=179, Evalue=4e-45,
Organism=Caenorhabditis elegans, GI17536103, Length=396, Percent_Identity=34.0909090909091, Blast_Score=176, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI17553716, Length=359, Percent_Identity=31.1977715877437, Blast_Score=176, Evalue=4e-44,
Organism=Caenorhabditis elegans, GI17505370, Length=433, Percent_Identity=29.5612009237875, Blast_Score=173, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI193208216, Length=377, Percent_Identity=31.8302387267904, Blast_Score=167, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17508543, Length=378, Percent_Identity=28.5714285714286, Blast_Score=158, Evalue=7e-39,
Organism=Caenorhabditis elegans, GI71990816, Length=355, Percent_Identity=31.2676056338028, Blast_Score=155, Evalue=6e-38,
Organism=Caenorhabditis elegans, GI17507641, Length=392, Percent_Identity=28.3163265306122, Blast_Score=147, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI32564046, Length=383, Percent_Identity=28.4595300261097, Blast_Score=142, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI25148203, Length=414, Percent_Identity=25.8454106280193, Blast_Score=141, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17556951, Length=384, Percent_Identity=25.5208333333333, Blast_Score=139, Evalue=6e-33,
Organism=Caenorhabditis elegans, GI71982862, Length=225, Percent_Identity=31.5555555555556, Blast_Score=137, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI25148291, Length=331, Percent_Identity=27.190332326284, Blast_Score=126, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17557982, Length=399, Percent_Identity=26.3157894736842, Blast_Score=117, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71997889, Length=377, Percent_Identity=23.0769230769231, Blast_Score=111, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71987152, Length=101, Percent_Identity=43.5643564356436, Blast_Score=99, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI25148205, Length=351, Percent_Identity=24.2165242165242, Blast_Score=97, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6323021, Length=353, Percent_Identity=37.9603399433428, Blast_Score=252, Evalue=1e-67,
Organism=Saccharomyces cerevisiae, GI6324217, Length=356, Percent_Identity=38.4831460674157, Blast_Score=248, Evalue=2e-66,
Organism=Saccharomyces cerevisiae, GI6321856, Length=392, Percent_Identity=35.969387755102, Blast_Score=244, Evalue=3e-65,
Organism=Saccharomyces cerevisiae, GI6321360, Length=350, Percent_Identity=40, Blast_Score=243, Evalue=9e-65,
Organism=Saccharomyces cerevisiae, GI6325138, Length=354, Percent_Identity=37.2881355932203, Blast_Score=239, Evalue=1e-63,
Organism=Saccharomyces cerevisiae, GI6324778, Length=355, Percent_Identity=36.056338028169, Blast_Score=238, Evalue=2e-63,
Organism=Saccharomyces cerevisiae, GI6320224, Length=386, Percent_Identity=34.7150259067358, Blast_Score=234, Evalue=3e-62,
Organism=Saccharomyces cerevisiae, GI6320041, Length=374, Percent_Identity=34.2245989304813, Blast_Score=224, Evalue=2e-59,
Organism=Saccharomyces cerevisiae, GI6321963, Length=408, Percent_Identity=34.8039215686275, Blast_Score=220, Evalue=5e-58,
Organism=Saccharomyces cerevisiae, GI6322912, Length=373, Percent_Identity=36.7292225201072, Blast_Score=219, Evalue=1e-57,
Organism=Saccharomyces cerevisiae, GI6322323, Length=373, Percent_Identity=36.7292225201072, Blast_Score=219, Evalue=1e-57,
Organism=Saccharomyces cerevisiae, GI6320173, Length=421, Percent_Identity=29.4536817102138, Blast_Score=213, Evalue=5e-56,
Organism=Saccharomyces cerevisiae, GI6323947, Length=454, Percent_Identity=31.2775330396476, Blast_Score=198, Evalue=3e-51,
Organism=Saccharomyces cerevisiae, GI6320119, Length=359, Percent_Identity=33.4261838440111, Blast_Score=197, Evalue=3e-51,
Organism=Saccharomyces cerevisiae, GI6320449, Length=365, Percent_Identity=33.4246575342466, Blast_Score=194, Evalue=4e-50,
Organism=Saccharomyces cerevisiae, GI6324620, Length=400, Percent_Identity=31.25, Blast_Score=193, Evalue=6e-50,
Organism=Saccharomyces cerevisiae, GI6319714, Length=421, Percent_Identity=29.9287410926366, Blast_Score=190, Evalue=6e-49,
Organism=Saccharomyces cerevisiae, GI6322427, Length=369, Percent_Identity=32.7913279132791, Blast_Score=185, Evalue=2e-47,
Organism=Saccharomyces cerevisiae, GI6320400, Length=430, Percent_Identity=31.1627906976744, Blast_Score=184, Evalue=5e-47,
Organism=Saccharomyces cerevisiae, GI6321267, Length=391, Percent_Identity=32.4808184143223, Blast_Score=176, Evalue=7e-45,
Organism=Saccharomyces cerevisiae, GI6321111, Length=386, Percent_Identity=32.1243523316062, Blast_Score=175, Evalue=2e-44,
Organism=Saccharomyces cerevisiae, GI6323306, Length=418, Percent_Identity=27.9904306220096, Blast_Score=153, Evalue=8e-38,
Organism=Saccharomyces cerevisiae, GI6322876, Length=527, Percent_Identity=26.7552182163188, Blast_Score=141, Evalue=4e-34,
Organism=Saccharomyces cerevisiae, GI6324366, Length=366, Percent_Identity=26.5027322404372, Blast_Score=114, Evalue=5e-26,
Organism=Saccharomyces cerevisiae, GI6319618, Length=282, Percent_Identity=31.9148936170213, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6321374, Length=213, Percent_Identity=27.2300469483568, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24645031, Length=361, Percent_Identity=37.6731301939058, Blast_Score=251, Evalue=1e-66,
Organism=Drosophila melanogaster, GI24584399, Length=341, Percent_Identity=40.4692082111437, Blast_Score=248, Evalue=9e-66,
Organism=Drosophila melanogaster, GI24662330, Length=370, Percent_Identity=37.2972972972973, Blast_Score=243, Evalue=2e-64,
Organism=Drosophila melanogaster, GI24585582, Length=355, Percent_Identity=36.6197183098592, Blast_Score=241, Evalue=8e-64,
Organism=Drosophila melanogaster, GI24584994, Length=387, Percent_Identity=36.9509043927649, Blast_Score=240, Evalue=2e-63,
Organism=Drosophila melanogaster, GI24642151, Length=362, Percent_Identity=35.0828729281768, Blast_Score=239, Evalue=3e-63,
Organism=Drosophila melanogaster, GI17985987, Length=379, Percent_Identity=37.467018469657, Blast_Score=239, Evalue=4e-63,
Organism=Drosophila melanogaster, GI21355075, Length=355, Percent_Identity=36.6197183098592, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI28574962, Length=347, Percent_Identity=38.0403458213257, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI21356161, Length=433, Percent_Identity=33.4872979214781, Blast_Score=232, Evalue=6e-61,
Organism=Drosophila melanogaster, GI24644483, Length=424, Percent_Identity=33.0188679245283, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI281361218, Length=424, Percent_Identity=33.0188679245283, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI24644481, Length=424, Percent_Identity=33.0188679245283, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI24644487, Length=424, Percent_Identity=33.0188679245283, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI45551833, Length=424, Percent_Identity=33.0188679245283, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI24644485, Length=424, Percent_Identity=33.0188679245283, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI24644479, Length=424, Percent_Identity=33.0188679245283, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI17977678, Length=356, Percent_Identity=36.2359550561798, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI24582080, Length=406, Percent_Identity=35.7142857142857, Blast_Score=224, Evalue=2e-58,
Organism=Drosophila melanogaster, GI24582078, Length=406, Percent_Identity=35.7142857142857, Blast_Score=224, Evalue=2e-58,
Organism=Drosophila melanogaster, GI17136248, Length=406, Percent_Identity=35.7142857142857, Blast_Score=224, Evalue=2e-58,
Organism=Drosophila melanogaster, GI24582075, Length=406, Percent_Identity=35.7142857142857, Blast_Score=224, Evalue=2e-58,
Organism=Drosophila melanogaster, GI24583279, Length=371, Percent_Identity=32.8840970350404, Blast_Score=224, Evalue=2e-58,
Organism=Drosophila melanogaster, GI24583281, Length=371, Percent_Identity=32.8840970350404, Blast_Score=224, Evalue=2e-58,
Organism=Drosophila melanogaster, GI18857967, Length=347, Percent_Identity=36.3112391930836, Blast_Score=222, Evalue=7e-58,
Organism=Drosophila melanogaster, GI24581954, Length=386, Percent_Identity=33.419689119171, Blast_Score=218, Evalue=1e-56,
Organism=Drosophila melanogaster, GI24581952, Length=386, Percent_Identity=33.419689119171, Blast_Score=218, Evalue=1e-56,
Organism=Drosophila melanogaster, GI24581956, Length=386, Percent_Identity=33.419689119171, Blast_Score=218, Evalue=1e-56,
Organism=Drosophila melanogaster, GI28575014, Length=361, Percent_Identity=34.0720221606648, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI17136814, Length=399, Percent_Identity=34.8370927318296, Blast_Score=213, Evalue=4e-55,
Organism=Drosophila melanogaster, GI28571808, Length=410, Percent_Identity=30.7317073170732, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI28571809, Length=410, Percent_Identity=30.7317073170732, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI281365720, Length=311, Percent_Identity=36.0128617363344, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI24666101, Length=360, Percent_Identity=32.7777777777778, Blast_Score=185, Evalue=7e-47,
Organism=Drosophila melanogaster, GI17647335, Length=390, Percent_Identity=30.5128205128205, Blast_Score=181, Evalue=2e-45,
Organism=Drosophila melanogaster, GI21355559, Length=375, Percent_Identity=33.3333333333333, Blast_Score=173, Evalue=3e-43,
Organism=Drosophila melanogaster, GI24643725, Length=386, Percent_Identity=31.3471502590674, Blast_Score=172, Evalue=6e-43,
Organism=Drosophila melanogaster, GI19920478, Length=392, Percent_Identity=29.5918367346939, Blast_Score=168, Evalue=8e-42,
Organism=Drosophila melanogaster, GI24642822, Length=376, Percent_Identity=28.9893617021277, Blast_Score=160, Evalue=3e-39,
Organism=Drosophila melanogaster, GI20130173, Length=530, Percent_Identity=26.4150943396226, Blast_Score=157, Evalue=2e-38,
Organism=Drosophila melanogaster, GI24668515, Length=362, Percent_Identity=27.0718232044199, Blast_Score=127, Evalue=3e-29,
Organism=Drosophila melanogaster, GI17136666, Length=424, Percent_Identity=26.4150943396226, Blast_Score=122, Evalue=7e-28,
Organism=Drosophila melanogaster, GI24640164, Length=355, Percent_Identity=26.1971830985915, Blast_Score=119, Evalue=8e-27,
Organism=Drosophila melanogaster, GI28571338, Length=198, Percent_Identity=31.8181818181818, Blast_Score=117, Evalue=3e-26,
Organism=Drosophila melanogaster, GI18859659, Length=198, Percent_Identity=31.8181818181818, Blast_Score=116, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005580
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000629
- InterPro:   IPR014014 [H]

Pfam domain/function: PF03880 DbpA; PF00270 DEAD; PF00271 Helicase_C [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 67663; Mature: 67531

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS00039 DEAD_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKKDSNSLGSEQENFHNEDSPLLESKNLENKKEIESQLLEVSKENDNENGFLDFGFNQ
CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCH
SILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTDNKELN
HHHHHHHHCCCCCCCCCHHHHCHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC
AKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDVVVGTPG
EEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHEEEEECCCH
RIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSATMPSEI
HHHHHHHCCCEEEEEEEEEEECCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCHHH
RNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNEGVIIFVRTK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHH
LLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARGLDVERIK
HHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHEEEEEHHHHHCCCCHHHEE
LVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRTKIEEINIPS
EEEECCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHCCCHHHCCCEEECCCC
NKIINEKRMEKLIDNVNESFLAKDENEENKALIIDVLDNLKEKYSMDESNIAMAAINLVI
HHHCCHHHHHHHHHHCCHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCEEEEEEEEE
GNKSFFVDEDDSWINKQNNTDRNRSNRNSNNRMRNSNRRNNYQNDSFETYKFNFGKFDGV
CCCEEEECCCCCHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCC
RVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRDLHRETKNKLKKIKLRN
HHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AFKKDSNSLGSEQENFHNEDSPLLESKNLENKKEIESQLLEVSKENDNENGFLDFGFNQ
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCH
SILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTDNKELN
HHHHHHHHCCCCCCCCCHHHHCHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC
AKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDVVVGTPG
EEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHEEEEECCCH
RIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSATMPSEI
HHHHHHHCCCEEEEEEEEEEECCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCHHH
RNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNEGVIIFVRTK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHH
LLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARGLDVERIK
HHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHEEEEEHHHHHCCCCHHHEE
LVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRTKIEEINIPS
EEEECCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHCCCHHHCCCEEECCCC
NKIINEKRMEKLIDNVNESFLAKDENEENKALIIDVLDNLKEKYSMDESNIAMAAINLVI
HHHCCHHHHHHHHHHCCHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCEEEEEEEEE
GNKSFFVDEDDSWINKQNNTDRNRSNRNSNNRMRNSNRRNNYQNDSFETYKFNFGKFDGV
CCCEEEECCCCCHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCC
RVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRDLHRETKNKLKKIKLRN
HHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]