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The map label for this gene is radA

Identifier: 121639505

GI number: 121639505

Start: 4005335

End: 4006777

Strand: Direct

Name: radA

Synonym: BCG_3650

Alternate gene names: 121639505

Gene position: 4005335-4006777 (Clockwise)

Preceding gene: 121639504

Following gene: 121639506

Centisome position: 91.56

GC content: 67.91

Gene sequence:

>1443_bases
GTGGCCAACGCTCGTTCGCAGTACCGCTGTTCGGAATGCCGCCATGTCAGCGCGAAGTGGGTGGGACGCTGCCTGGAGTG
CGGCCGCTGGGGCACCGTAGACGAGGTGGCGGTGCTCAGTGCCGTCGGTGGCACCAGGCGCCGTTCGGTGGCGCCGGCGT
CGGGCGCCGTTCCGATCAGTGCCGTCGACGCGCATCGGACCCGACCCTGCCCAACCGGCATCGACGAACTGGACCGGGTG
CTAGGTGGCGGTATCGTTCCCGGTTCGGTGACACTGCTGGCCGGCGATCCCGGAGTGGGTAAGTCGACGCTGTTGCTCGA
GGTCGCGCACCGCTGGGCCCAGTCCGGACGGCGCGCGCTCTATGTCTCTGGTGAGGAATCCGCCGGTCAGATCCGGCTGC
GTGCCGACCGGATCGGCTGCGGCACGGAGGTCGAGGAGATCTACCTCGCCGCACAATCCGACGTGCACACCGTGCTCGAC
CAGATCGAGACGGTGCAGCCGGCACTGGTCATCGTCGACTCGGTGCAGACCATGTCCACCAGCGAGGCCGACGGCGTCAC
CGGCGGGGTCACGCAGGTCCGTGCGGTTACGGCTGCCCTGACCGCTGCCGCCAAGGCCAACGAGGTCGCATTGATTCTCG
TCGGCCACGTCACGAAGGACGGGGCCATAGCCGGACCGCGTTCGCTAGAGCACCTCGTCGACGTTGTGCTGCATTTTGAA
GGGGACCGCAACGGTGCGCTGCGGATGGTCCGCGGGGTCAAGAACCGATTCGGCGCCGCCGATGAAGTCGGATGTTTCCT
CCTGCACGACAACGGAATTGACGGTATCGTCGACCCGTCGAACCTGTTCCTGGACCAGCGGCCGACACCCGTCGCCGGTA
CCGCGATCACCGTGACGCTGGACGGAAAACGGCCGCTCGTCGGGGAAGTCCAGGCATTGCTGGCCACACCGTGCGGCGGC
TCGCCGAGGCGGGCCGTCAGCGGGATCCACCAGGCCCGCGCTGCGATGATCGCTGCTGTGCTGGAAAAGCACGCACGGCT
GGCGATCGCCGTTAACGACATCTACCTGTCCACCGTGGGCGGCATGCGGTTGACCGAGCCGTCGGCGGATCTGGCGGTCG
CCATCGCGCTCGCCTCGGCCTATGCAAATCTGCCGCTGCCCACCACTGCCGTCATGATCGGCGAGGTAGGTCTGGCCGGC
GACATCCGGCGGGTCAACGGGATGGCGCGGCGCCTTAGCGAAGCCGCCCGCCAAGGGTTCACCATCGCCTTGGTCCCGCC
CAGTGACGATCCGGTGCCGCCCGGTATGCACGCGCTGCGCGCATCCACCATCGTCGCGGCGCTGCAGTACATGGTCGACA
TTGCCGACCACCGCGGCACCACCCTCGCAACCCCGCCCTCACATTCCGGGACTGGACACGTCCCACTAGGGCGCGGTACA
TAG

Upstream 100 bases:

>100_bases
CGATCTCGGCCGGATTGGCTACGCCGCACGAATAGGCGCCGCATCGTCGCCAGACGAGCGACTCGCTCGGGTTGTCACAC
CCCCCCGATACGGTCACGGC

Downstream 100 bases:

>100_bases
CAGAATGCACGCTGTGACTCGTCCGACCCTGCGTGAGGCTGTCGCCCGCCTAGCCCCGGGCACTGGGCTGCGGGACGGCC
TGGAGCGTATCCTGCGCGGC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISAVDAHRTRPCPTGIDELDRV
LGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLD
QIETVQPALVIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE
GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLATPCGG
SPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAG
DIRRVNGMARRLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGTTLATPPSHSGTGHVPLGRGT

Sequences:

>Translated_480_residues
MANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISAVDAHRTRPCPTGIDELDRV
LGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLD
QIETVQPALVIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE
GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLATPCGG
SPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAG
DIRRVNGMARRLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGTTLATPPSHSGTGHVPLGRGT
>Mature_479_residues
ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISAVDAHRTRPCPTGIDELDRVL
GGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQ
IETVQPALVIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEG
DRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLATPCGGS
PRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGD
IRRVNGMARRLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGTTLATPPSHSGTGHVPLGRGT

Specific function: May play a role in the repair of endogenous alkylation damage

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily

Homologues:

Organism=Escherichia coli, GI1790850, Length=463, Percent_Identity=38.2289416846652, Blast_Score=323, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RADA_MYCBO (P65954)

Other databases:

- EMBL:   BX248346
- RefSeq:   NP_857255.1
- ProteinModelPortal:   P65954
- SMR:   P65954
- EnsemblBacteria:   EBMYCT00000017895
- GeneID:   1093449
- GenomeReviews:   BX248333_GR
- KEGG:   mbo:Mb3616
- GeneTree:   EBGT00050000017495
- HOGENOM:   HBG286573
- OMA:   IGVFEMT
- ProtClustDB:   PRK11823
- BioCyc:   MBOV233413:MB3616-MONOMER
- GO:   GO:0006508
- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568
- PRINTS:   PR01874
- SMART:   SM00382
- TIGRFAMs:   TIGR00416

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: NA

Molecular weight: Translated: 49914; Mature: 49782

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPIS
CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEE
AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL
ECCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST
EEECCCCCCEEEEEECCCCCCCCHHHHEEECCCHHHHHHHHHHHCCCEEEEEECHHHCCC
SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE
CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHEEC
GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL
CCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHEECCCCCCCCCCEEEEEE
DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVG
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEECC
GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF
CCEECCCCCHHHHHHHHHHHHHCCCCCHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCC
TIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGTTLATPPSHSGTGHVPLGRGT
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPIS
CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEE
AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL
ECCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST
EEECCCCCCEEEEEECCCCCCCCHHHHEEECCCHHHHHHHHHHHCCCEEEEEECHHHCCC
SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE
CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHEEC
GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL
CCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHEECCCCCCCCCCEEEEEE
DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVG
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEECC
GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF
CCEECCCCCHHHHHHHHHHHHHCCCCCHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCC
TIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGTTLATPPSHSGTGHVPLGRGT
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972