Definition | Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome. |
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Accession | NC_008769 |
Length | 4,374,522 |
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The map label for this gene is ydcJ [C]
Identifier: 121639215
GI number: 121639215
Start: 3660899
End: 3662146
Strand: Direct
Name: ydcJ [C]
Synonym: BCG_3357
Alternate gene names: 121639215
Gene position: 3660899-3662146 (Clockwise)
Preceding gene: 121639210
Following gene: 121639216
Centisome position: 83.69
GC content: 66.51
Gene sequence:
>1248_bases ATGAGCCGCTCGAAAAGACTGCAGACTGGCCAGCTGCGCGCGCGCTTCGCCGCCGGGTTGTCAGCCATGTACGCCGCTGA GGTGCCCGCCTACGGCACGCTGGTCGAGGTATGCGCACAAGTCAACTCCGATTACCTGACCCGGCATCGGCGAGCCGAGC GGCTGGGGTCGCTTCAGCGCGTCACCGCCGAGCGCCACGGCGCCATCCGAGTGGGCAACCCGGCCGAACTCGCTGCGGTC GCCGACCTGTTCGCCGCGTTCGGGATGCTGCCGGTCGGCTACTACGATCTGCGCACCGCTGAGTCACCAATTCCAGTGGT GTCCACCGCATTTCGCCCAATCGATGCGAACGAGCTGGCACACAACCCGTTTCGGGTGTTCACCTCGATGCTGGCCATCG AGGATCGGCGGTACTTCGATGCCGACCTACGCACCCGAGTGCAGACCTTCCTCGCGCGCCGGCAACTCTTTGACCCCGCG TTGCTCGCCCAGGCGCGGGCAATCGCGGCTGACGGCGGCTGCGATGCCGACGACGCACCGGCTTTCGTCGCCGCGGCGGT GGCCGCGTTTGCGCTGTCGCGGGAACCGGTCGAGAAATCCTGGTACGACGAGTTGTCCAGGGTGTCGGCGGTGGCCGCTG ATATCGCTGGAGTCGGCTCCACACACATCAACCATCTGACGCCTCGGGTGCTCGACATAGACGATCTGTACCGTCGGATG ACCGAGCGCGGCATCACCATGATCGACACCATCCAAGGCCCTCCCCGCACCGACGGACCCGATGTGTTGTTGCGGCAAAC CTCATTTCGCGCGCTGGCCGAACCACGCATGTTTCGCGACGAGGACGGTACCGTGACGCCGGGAATCCTGCGGGTGCGGT TCGGTGAGGTCGAGGCGCGCGGTGTCGCGCTGACCCCGCGAGGGCGCGAACGCTACGAAGCCGCGATGGCGGCCGCAGAT CCGGCCGCGGTCTGGGCCACTCACTTTCCCTCGACGGATGCGGAGATGGCCGCTCAAGGCTTGGCCTACTACCGAGGTGG TGACCCGTCAGCGCCGATCGTCTACGAAGACTTCCTGCCCGCTTCGGCCGCGGGCATCTTCCGCTCCAACCTGGATCGCG ACTCGCAAACCGGTGACGGACCCGACGATGCCGGCTACAACGTCGATTGGTTGGCCGGGGCAATCGGCCGACACATTCAC GACCCGTATGCGCTCTATGACGCGCTCGCCCAGGAGGAGCGGCGCTGA
Upstream 100 bases:
>100_bases GCGTCACACGTCCGTCGGCGGCCAGTTCGCGCACCAGGATCCGATCGATATCGTCGAGCGCCTCGTTCATGGCCGGAGAC TATCGCAACGGCAGTGCCGC
Downstream 100 bases:
>100_bases TAACCACTGACGCGTTACGAGCCCAGGTGCTCGAAGCCTGCCAAGCGATCGGCGTAACCGCCGCCCTTGGCGAGCCGGGC GAACACAGCCTGCCCGCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MSRSKRLQTGQLRARFAAGLSAMYAAEVPAYGTLVEVCAQVNSDYLTRHRRAERLGSLQRVTAERHGAIRVGNPAELAAV ADLFAAFGMLPVGYYDLRTAESPIPVVSTAFRPIDANELAHNPFRVFTSMLAIEDRRYFDADLRTRVQTFLARRQLFDPA LLAQARAIAADGGCDADDAPAFVAAAVAAFALSREPVEKSWYDELSRVSAVAADIAGVGSTHINHLTPRVLDIDDLYRRM TERGITMIDTIQGPPRTDGPDVLLRQTSFRALAEPRMFRDEDGTVTPGILRVRFGEVEARGVALTPRGRERYEAAMAAAD PAAVWATHFPSTDAEMAAQGLAYYRGGDPSAPIVYEDFLPASAAGIFRSNLDRDSQTGDGPDDAGYNVDWLAGAIGRHIH DPYALYDALAQEERR
Sequences:
>Translated_415_residues MSRSKRLQTGQLRARFAAGLSAMYAAEVPAYGTLVEVCAQVNSDYLTRHRRAERLGSLQRVTAERHGAIRVGNPAELAAV ADLFAAFGMLPVGYYDLRTAESPIPVVSTAFRPIDANELAHNPFRVFTSMLAIEDRRYFDADLRTRVQTFLARRQLFDPA LLAQARAIAADGGCDADDAPAFVAAAVAAFALSREPVEKSWYDELSRVSAVAADIAGVGSTHINHLTPRVLDIDDLYRRM TERGITMIDTIQGPPRTDGPDVLLRQTSFRALAEPRMFRDEDGTVTPGILRVRFGEVEARGVALTPRGRERYEAAMAAAD PAAVWATHFPSTDAEMAAQGLAYYRGGDPSAPIVYEDFLPASAAGIFRSNLDRDSQTGDGPDDAGYNVDWLAGAIGRHIH DPYALYDALAQEERR >Mature_414_residues SRSKRLQTGQLRARFAAGLSAMYAAEVPAYGTLVEVCAQVNSDYLTRHRRAERLGSLQRVTAERHGAIRVGNPAELAAVA DLFAAFGMLPVGYYDLRTAESPIPVVSTAFRPIDANELAHNPFRVFTSMLAIEDRRYFDADLRTRVQTFLARRQLFDPAL LAQARAIAADGGCDADDAPAFVAAAVAAFALSREPVEKSWYDELSRVSAVAADIAGVGSTHINHLTPRVLDIDDLYRRMT ERGITMIDTIQGPPRTDGPDVLLRQTSFRALAEPRMFRDEDGTVTPGILRVRFGEVEARGVALTPRGRERYEAAMAAADP AAVWATHFPSTDAEMAAQGLAYYRGGDPSAPIVYEDFLPASAAGIFRSNLDRDSQTGDGPDDAGYNVDWLAGAIGRHIHD PYALYDALAQEERR
Specific function: Unknown
COG id: COG5383
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ydcJ
Homologues:
Organism=Escherichia coli, GI1787692, Length=450, Percent_Identity=38.8888888888889, Blast_Score=262, Evalue=3e-71,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y3292_MYCTU (P65065)
Other databases:
- EMBL: BX842582 - EMBL: AE000516 - PIR: E70981 - RefSeq: NP_217809.1 - RefSeq: NP_337920.1 - ProteinModelPortal: P65065 - SMR: P65065 - EnsemblBacteria: EBMYCT00000000790 - EnsemblBacteria: EBMYCT00000070098 - GeneID: 888734 - GeneID: 926667 - GenomeReviews: AE000516_GR - GenomeReviews: AL123456_GR - KEGG: mtc:MT3391 - KEGG: mtu:Rv3292 - TIGR: MT3391 - TubercuList: Rv3292 - GeneTree: EBGT00050000015592 - HOGENOM: HBG474907 - OMA: MYRAEVP - ProtClustDB: CLSK792410 - InterPro: IPR009770
Pfam domain/function: PF07063 DUF1338
EC number: NA
Molecular weight: Translated: 45332; Mature: 45201
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSKRLQTGQLRARFAAGLSAMYAAEVPAYGTLVEVCAQVNSDYLTRHRRAERLGSLQR CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH VTAERHGAIRVGNPAELAAVADLFAAFGMLPVGYYDLRTAESPIPVVSTAFRPIDANELA HHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHCCCCCCHHHHC HNPFRVFTSMLAIEDRRYFDADLRTRVQTFLARRQLFDPALLAQARAIAADGGCDADDAP CCHHHHHHHHHHHHHCHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCH AFVAAAVAAFALSREPVEKSWYDELSRVSAVAADIAGVGSTHINHLTPRVLDIDDLYRRM HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEECHHHHHHHH TERGITMIDTIQGPPRTDGPDVLLRQTSFRALAEPRMFRDEDGTVTPGILRVRFGEVEAR HHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEECCCCCC GVALTPRGRERYEAAMAAADPAAVWATHFPSTDAEMAAQGLAYYRGGDPSAPIVYEDFLP CEEECCCCHHHHHHHHHHCCCHHHHEECCCCCCHHHHHHHHHEECCCCCCCCEEECCCCC ASAAGIFRSNLDRDSQTGDGPDDAGYNVDWLAGAIGRHIHDPYALYDALAQEERR HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC >Mature Secondary Structure SRSKRLQTGQLRARFAAGLSAMYAAEVPAYGTLVEVCAQVNSDYLTRHRRAERLGSLQR CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH VTAERHGAIRVGNPAELAAVADLFAAFGMLPVGYYDLRTAESPIPVVSTAFRPIDANELA HHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHCCCCCCHHHHC HNPFRVFTSMLAIEDRRYFDADLRTRVQTFLARRQLFDPALLAQARAIAADGGCDADDAP CCHHHHHHHHHHHHHCHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCH AFVAAAVAAFALSREPVEKSWYDELSRVSAVAADIAGVGSTHINHLTPRVLDIDDLYRRM HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEECHHHHHHHH TERGITMIDTIQGPPRTDGPDVLLRQTSFRALAEPRMFRDEDGTVTPGILRVRFGEVEAR HHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEECCCCCC GVALTPRGRERYEAAMAAADPAAVWATHFPSTDAEMAAQGLAYYRGGDPSAPIVYEDFLP CEEECCCCHHHHHHHHHHCCCHHHHEECCCCCCHHHHHHHHHEECCCCCCCCEEECCCCC ASAAGIFRSNLDRDSQTGDGPDDAGYNVDWLAGAIGRHIHDPYALYDALAQEERR HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036