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The map label for this gene is ygdK [C]

Identifier: 121639173

GI number: 121639173

Start: 3618226

End: 3618657

Strand: Direct

Name: ygdK [C]

Synonym: BCG_3313

Alternate gene names: 121639173

Gene position: 3618226-3618657 (Clockwise)

Preceding gene: 121639172

Following gene: 121639174

Centisome position: 82.71

GC content: 67.59

Gene sequence:

>432_bases
ATGACCGCGCCCGCGAGCCTGCCCGCGCCGCTAGCAGAGGTGGTATCCGACTTCGCCGAAGTCCAGGGTCAAGACAAGCT
GAGGCTGTTGCTGGAATTCGCCAACGAGCTGCCGGCGCTTCCGTCGCACCTGGCCGAGTCCGCTATGGAGCCGGTCCCCG
AGTGCCAGTCTCCGCTGTTTTTGCACGTCGACGCGAGTGACCCCAACCGGGTGCGCCTGCATTTCAGCGCGCCGGCCGAA
GCGCCAACCACGCGCGGGTTCGCCTCGATCCTGGCCGCCGGCCTAGACGAGCAACCGGCCGCCGACATCTTGGCGGTGCC
CGAGGATTTCTACACCGAGCTGGGTCTGGCTGCCTTGATCAGCCCACTGCGGTTGCGGGGAATGTCGGCGATGCTGGCCC
GGATCAAGCGCCGGCTGCGCGAAGCGGACTGA

Upstream 100 bases:

>100_bases
AGGCAGATGTACGGAACTACGACGGCTCGTGGACCGAGTGGGGCAACGCCGTGCGAGTGCCGATCGTCGCGGGCGAAGAA
CCAGGAGTGGTACCCGTCGT

Downstream 100 bases:

>100_bases
ATCGAGGAACCGCGTGAGCGGGTCAGCGGCGCGACGCTTAAACTTCCCCCGACAAGACTTGTAAGAAAATCTCTTAGAGA
CGAAGAATCAGCCCGACAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MTAPASLPAPLAEVVSDFAEVQGQDKLRLLLEFANELPALPSHLAESAMEPVPECQSPLFLHVDASDPNRVRLHFSAPAE
APTTRGFASILAAGLDEQPAADILAVPEDFYTELGLAALISPLRLRGMSAMLARIKRRLREAD

Sequences:

>Translated_143_residues
MTAPASLPAPLAEVVSDFAEVQGQDKLRLLLEFANELPALPSHLAESAMEPVPECQSPLFLHVDASDPNRVRLHFSAPAE
APTTRGFASILAAGLDEQPAADILAVPEDFYTELGLAALISPLRLRGMSAMLARIKRRLREAD
>Mature_142_residues
TAPASLPAPLAEVVSDFAEVQGQDKLRLLLEFANELPALPSHLAESAMEPVPECQSPLFLHVDASDPNRVRLHFSAPAEA
PTTRGFASILAAGLDEQPAADILAVPEDFYTELGLAALISPLRLRGMSAMLARIKRRLREAD

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3284_MYCTU (P67123)

Other databases:

- EMBL:   BX842582
- EMBL:   AE000516
- PIR:   E70980
- RefSeq:   NP_217801.1
- RefSeq:   NP_337912.1
- ProteinModelPortal:   P67123
- SMR:   P67123
- EnsemblBacteria:   EBMYCT00000001270
- EnsemblBacteria:   EBMYCT00000069407
- GeneID:   887966
- GeneID:   922481
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT3383
- KEGG:   mtu:Rv3284
- TIGR:   MT3383
- TubercuList:   Rv3284
- GeneTree:   EBGT00050000016062
- HOGENOM:   HBG608886
- OMA:   EQVVECQ
- ProtClustDB:   CLSK872165
- InterPro:   IPR003808

Pfam domain/function: PF02657 SufE

EC number: NA

Molecular weight: Translated: 15395; Mature: 15264

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPASLPAPLAEVVSDFAEVQGQDKLRLLLEFANELPALPSHLAESAMEPVPECQSPLF
CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEE
LHVDASDPNRVRLHFSAPAEAPTTRGFASILAAGLDEQPAADILAVPEDFYTELGLAALI
EEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHH
SPLRLRGMSAMLARIKRRLREAD
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TAPASLPAPLAEVVSDFAEVQGQDKLRLLLEFANELPALPSHLAESAMEPVPECQSPLF
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEE
LHVDASDPNRVRLHFSAPAEAPTTRGFASILAAGLDEQPAADILAVPEDFYTELGLAALI
EEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHH
SPLRLRGMSAMLARIKRRLREAD
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036