Definition | Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome. |
---|---|
Accession | NC_008769 |
Length | 4,374,522 |
Click here to switch to the map view.
The map label for this gene is yqhO [H]
Identifier: 121637923
GI number: 121637923
Start: 2266399
End: 2267373
Strand: Reverse
Name: yqhO [H]
Synonym: BCG_2056c
Alternate gene names: 121637923
Gene position: 2267373-2266399 (Counterclockwise)
Preceding gene: 121637924
Following gene: 121637919
Centisome position: 51.83
GC content: 64.72
Gene sequence:
>975_bases GTGGCGCTGGTGAGCACAGCACGCGTCGACCTGGTGTGTGAAGGCGGCGGGGTCCGGGGGATAGGGTTGGTTGGAGCGGT GGACGCGCTGGCCGATGCCGGTTACCGATTTCCCAGGGTGGCGGGCAGCAGCGCGGGTGCGATCGTCGCGTCGCTGGTCG CGGCCCTACAAACGGCCGGTGAGCCGGTGACGCGGCTTGCCGAGATGATGCGCAGCATCGACTACCCGAAGTTCCTCGAC CGCAATCTGATAGGACACGTGCCGTTGATCGGCGGGGGACTTTCTCTGCTGTTGTCGGACGGCGTTTACCGCGGGGCCTA TCTGGAACAGCTGCTCGGCGGTTTGCTCGCTGACCTAGGCGTGCACACCTTTGGCGACTTGCGCACCGGCGAGGCACCCG AACAGTTCGCCTGGTCGCTGGTGGTCACCGCCAGCGACCTATCCCGTCGCCGACTCGTTCGCATCCCGTGGGACCTGGAC TCCTACGGCATCCACCCGGACGACTTCTCGGTGGCGCGTGCGGTGCACGCCTCATCGGCGATCCCGTTTGTGTTCGAGCC TGTTCGGGTGCGCGGCGCTACCTGGGTCGACGGTGGCTTGCTGTCGAACTTTCCGGTGGCGCTGTTCGACCGAACCGACG CTGAACCGCGATGGCCCACGTTCGGGATCAGGTTGTCAGCGCGTCCGGGCATTCCACCTACCCGGCCGGTCCAAGGGCCA GTGTCGTTGGGCATCGCGGCGATCGAAACACTGGTGAGCAATCAGGACAACGCCTACATCGACGATCCGTGTACCGTTCG GCGCACCATCTTCGTGCCCGCCCACGACGTGAGTCCGATCGACTTCGACATCACCGCCGAACAACGCGAGGCTCTTTACC AACGCGGATTTCAGGCGGGTCAAAAGTTCTTGGCGAACTGGAATTACGCCGATTATCTGGCTGACTGCGGCGGCCCGTTC ACGCCGTCGCTGTAG
Upstream 100 bases:
>100_bases GGCCGCGGCCCGCCCGAGCGGGGTAGTCGCGTGCGGCTATGTCCCACACCGGGACACCTGCACTTCTTCGCCGTCGACGG GCGTCGGATTCCGGGCTAAC
Downstream 100 bases:
>100_bases CTGTCGTTAACCGAGTCGTCCGGCTAGCGTGGGCTTTCCGGGGCCGGAGAGGTCGCTGACCGCCGCTGGCCTGCCGGCCA TTGCCATGAGCAAGGCTTCG
Product: putative transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MALVSTARVDLVCEGGGVRGIGLVGAVDALADAGYRFPRVAGSSAGAIVASLVAALQTAGEPVTRLAEMMRSIDYPKFLD RNLIGHVPLIGGGLSLLLSDGVYRGAYLEQLLGGLLADLGVHTFGDLRTGEAPEQFAWSLVVTASDLSRRRLVRIPWDLD SYGIHPDDFSVARAVHASSAIPFVFEPVRVRGATWVDGGLLSNFPVALFDRTDAEPRWPTFGIRLSARPGIPPTRPVQGP VSLGIAAIETLVSNQDNAYIDDPCTVRRTIFVPAHDVSPIDFDITAEQREALYQRGFQAGQKFLANWNYADYLADCGGPF TPSL
Sequences:
>Translated_324_residues MALVSTARVDLVCEGGGVRGIGLVGAVDALADAGYRFPRVAGSSAGAIVASLVAALQTAGEPVTRLAEMMRSIDYPKFLD RNLIGHVPLIGGGLSLLLSDGVYRGAYLEQLLGGLLADLGVHTFGDLRTGEAPEQFAWSLVVTASDLSRRRLVRIPWDLD SYGIHPDDFSVARAVHASSAIPFVFEPVRVRGATWVDGGLLSNFPVALFDRTDAEPRWPTFGIRLSARPGIPPTRPVQGP VSLGIAAIETLVSNQDNAYIDDPCTVRRTIFVPAHDVSPIDFDITAEQREALYQRGFQAGQKFLANWNYADYLADCGGPF TPSL >Mature_323_residues ALVSTARVDLVCEGGGVRGIGLVGAVDALADAGYRFPRVAGSSAGAIVASLVAALQTAGEPVTRLAEMMRSIDYPKFLDR NLIGHVPLIGGGLSLLLSDGVYRGAYLEQLLGGLLADLGVHTFGDLRTGEAPEQFAWSLVVTASDLSRRRLVRIPWDLDS YGIHPDDFSVARAVHASSAIPFVFEPVRVRGATWVDGGLLSNFPVALFDRTDAEPRWPTFGIRLSARPGIPPTRPVQGPV SLGIAAIETLVSNQDNAYIDDPCTVRRTIFVPAHDVSPIDFDITAEQREALYQRGFQAGQKFLANWNYADYLADCGGPFT PSL
Specific function: Probable lipid hydrolase [H]
COG id: COG1752
COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 patatin domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016035 - InterPro: IPR002641 [H]
Pfam domain/function: PF01734 Patatin [H]
EC number: NA
Molecular weight: Translated: 34749; Mature: 34618
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALVSTARVDLVCEGGGVRGIGLVGAVDALADAGYRFPRVAGSSAGAIVASLVAALQTAG CCCEECCEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC EPVTRLAEMMRSIDYPKFLDRNLIGHVPLIGGGLSLLLSDGVYRGAYLEQLLGGLLADLG CHHHHHHHHHHHCCCHHHHHCCHHCCCCEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHC VHTFGDLRTGEAPEQFAWSLVVTASDLSRRRLVRIPWDLDSYGIHPDDFSVARAVHASSA CCCCCCCCCCCCHHHHEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCC IPFVFEPVRVRGATWVDGGLLSNFPVALFDRTDAEPRWPTFGIRLSARPGIPPTRPVQGP CCEEECCEEECCCEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCH VSLGIAAIETLVSNQDNAYIDDPCTVRRTIFVPAHDVSPIDFDITAEQREALYQRGFQAG HHHHHHHHHHHHCCCCCCEECCCCCEEEEEEEECCCCCCCEEEECHHHHHHHHHHHHHHH QKFLANWNYADYLADCGGPFTPSL HHHHHCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure ALVSTARVDLVCEGGGVRGIGLVGAVDALADAGYRFPRVAGSSAGAIVASLVAALQTAG CCEECCEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC EPVTRLAEMMRSIDYPKFLDRNLIGHVPLIGGGLSLLLSDGVYRGAYLEQLLGGLLADLG CHHHHHHHHHHHCCCHHHHHCCHHCCCCEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHC VHTFGDLRTGEAPEQFAWSLVVTASDLSRRRLVRIPWDLDSYGIHPDDFSVARAVHASSA CCCCCCCCCCCCHHHHEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCC IPFVFEPVRVRGATWVDGGLLSNFPVALFDRTDAEPRWPTFGIRLSARPGIPPTRPVQGP CCEEECCEEECCCEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCH VSLGIAAIETLVSNQDNAYIDDPCTVRRTIFVPAHDVSPIDFDITAEQREALYQRGFQAG HHHHHHHHHHHHCCCCCCEECCCCCEEEEEEEECCCCCCCEEEECHHHHHHHHHHHHHHH QKFLANWNYADYLADCGGPFTPSL HHHHHCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]