Definition | Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome. |
---|---|
Accession | NC_008769 |
Length | 4,374,522 |
Click here to switch to the map view.
The map label for this gene is benC [H]
Identifier: 121637842
GI number: 121637842
Start: 2190656
End: 2193175
Strand: Direct
Name: benC [H]
Synonym: BCG_1976
Alternate gene names: 121637842
Gene position: 2190656-2193175 (Clockwise)
Preceding gene: 121637841
Following gene: 121637843
Centisome position: 50.08
GC content: 65.87
Gene sequence:
>2520_bases ATGGCGGTTCGTCAGGTCACCGTCGGCTATTCGGACGGCACGCACAAGACGATGCCGGTGCGGTGCGACCAGACGGTCCT GGATGCCGCCGAGGAACACGGCGTGGCCATCGTCAACGAATGCCAAAGCGGGATATGTGGCACCTGTGTGGCCACCTGCA CCGCCGGCCGCTACCAGATGGGACGCACCGAGGGACTGTCCGATGTCGAGCGGGCGGCGCGAAAGATCCTCACCTGCCAG ACGTTTGTTACCTCCGATTGCCGGATCGAGCTGCAGTATCCGGTCGACGACAACGCCGCCCTGCTGGTCACCGGTGACGG TGTGGTGACCGCGGTCGAGTTGGTGTCGCCCAGCACCGCCATCCTGCGGGTGGACACCTCTGGCATGGCCGGCGCGCTGA GATACCGGGCCGGCCAGTTCGCCCAATTGCAGGTTCCCGGTACCAACGTATGGCGCAACTACTCCTACGCCCATCCGGCC GACGGCCGCGGTGAGTGCGAGTTCATCATCAGGTTGCTGCCGGACGGCGTGATGTCGAATTATCTTCGCGACCGCGCCCA GCCCGGTGACCATATCGCGCTGCGCTGCAGCAAGGGCAGCTTTTATCTGCGCCCGATCGTGCGACCGGTGATCCTGGTCG CCGGAGGAACCGGCCTGTCAGCGATCCTGGCGATGGCCCAGAGCCTGGATGCCGATGTCGCTCACCCGGTCTACCTGCTC TACGGGGTCGAGCGCACCGAAGACCTGTGCAAGCTCGACGAACTCACCGAGCTGCGCCGCCGCGTTGGCCGCCTGGAGGT GCACGTCGTCGTCGCTCGCCCGGACCCCGACTGGGATGGGCGCACCGGGCTGGTCACCGACCTGCTCGACGAGCGGATGC TGGCGAGCGGTGACGCCGACGTGTATCTGTGCGGTCCGGTCGCCATGGTCGACGCAGCCCGAACCTGGCTGGACCACAAT GGCTTTCACCGTGTCGGGTTGTACTACGAGAAGTTCGTGGCCAGCGGGGCGGCGCGCCGCCGCACCCCGGCTCGGCTGGA TTACGCGGGCGTGGACATTGCCGAGGTGTGCCGCCGCGGCCGCGGCACCGCGGTGGTCATCGGCGGCAGCATCGCGGGCA TCGCGGCGGCGAAAATGCTCAGCGAGACCTTCGATCGCGTCATCGTGCTGGAGAAGGACGGCCCGCACCGTCGCCGCGAG GGCAGGCCGGGCGCGGCACAGGGTTGGCACCTGCACCACCTGCTGACCGCCGGGCAGATCGAGCTGGAGCGCATCTTCCC TGGCATCGTCGACGACATGGTGCGCGAGGGAGCGTTCAAGGTCGACATGGCCGCGCAGTACCGTATCCGGCTGGGCGGCA CCTGGAAGAAGCCCGGCACTAGTGACATCGAGATCGTCTGCGCGGGAAGGCCGCTGCTCGAATGGTGTGTGCGCCGCCGG CTCGACGACGAACCGCGCATCGACTTCCGCTACGAATCGGAGGTGGCCGATCTCGCCTTCGACCGCGCCAACAATGCCAT CGTCGGCGTCGCCGTGGACAATGGCGACGCCGACGGAGGCGACGGTTTGCAGGTGGTGCCCGCCGAGTTCGTCGTGGACG CGTCGGGCAAGAACACCCGCGTGCCGGAGTTCTTGGAGCGTCTCGGTGTTGGCGCTCCCGAGGCCGAGCAGGACATCATC AACTGCTTCTACTCCACGATGCAGCACCGGGTTCCGCCGGAGCGGCGGTGGCAGGACAAGGTGATGGTGATCTGCTATGC GTACCGCCCTTTCGAGGATACCTACGCCGCGCAGTACTACACCGACAGCTCCCGCACCATCCTGTCCACCTCACTGGTGG CCTACAACTGCTATTCGCCGCCGCGTACCGCCCGAGAATTCCGCGCGTTCGCCGACCTGATGCCGTCCCCGGTCATCGGG GAGAACATCGACGGGCTGGAGCCGGCATCGCCCATCTACAATTTCCGCTATCCCAACATGCTGCGGCTGCGCTACGAGAA GAAGCGCAACCTGCCGCGGGCTTTGCTGGCGGTGGGCGATGCCTACACCAGCGCCGACCCGGTGTCGGGTCTGGGTATGA GCCTGGCGCTCAAGGAAGTTCGGGAGATGCAGGCGCTGCTGGCTAAATACGGCGCCGGTCACCGGGATCTGCCGCGCCGG TACTACCGGGCGATCGCCAAGATGGCCGACACGGCCTGGTTCGTGATCCGCGAGCAGAACCTGCGCTTCGACTGGATGAA GGACGTCGACAAGAAGCGCCCGTTCTATTTCGGTGTGCTGACCTGGTACATGGACCGCGTGCTGGAGCTGGTGCATGACG ATCTCGACGCGTACCGGGAATTCTTGGCCGTCGTCCATCTGGTCAAGCCGCCGTCGGCGCTGATGCGACCCAGGATCGCC AGCCGCGTCCTCGGCAAATGGGCACGAACCCGATTGTCGGGCCAGAAGACGTTGATTGCCCGCAACTACGAAAATCATCC GATACCAGCCGAACCCGCGGACCAACTTGTAAACGCTTAG
Upstream 100 bases:
>100_bases CGGGCCCGTGGAAGGAGTCGTTGCGGCTGCTGGCCCACGAGGTCATGCCCAGACTCAACGCCCGCCTCGCCACCAAGCCC GCCACCGCGGTGGTGTAGCC
Downstream 100 bases:
>100_bases GAGAGCCCAACGTGTCGCAGGTCCATCGAATCCTGAACTGCCGGGGCACCCGCATCCATGCCGTGGCGGACAGCCCACCC GACCAACAGGGACCGTTGGT
Product: putative oxygenase
Products: NA
Alternate protein names: Ferredoxin; Ferredoxin--NAD(+) reductase [H]
Number of amino acids: Translated: 839; Mature: 838
Protein sequence:
>839_residues MAVRQVTVGYSDGTHKTMPVRCDQTVLDAAEEHGVAIVNECQSGICGTCVATCTAGRYQMGRTEGLSDVERAARKILTCQ TFVTSDCRIELQYPVDDNAALLVTGDGVVTAVELVSPSTAILRVDTSGMAGALRYRAGQFAQLQVPGTNVWRNYSYAHPA DGRGECEFIIRLLPDGVMSNYLRDRAQPGDHIALRCSKGSFYLRPIVRPVILVAGGTGLSAILAMAQSLDADVAHPVYLL YGVERTEDLCKLDELTELRRRVGRLEVHVVVARPDPDWDGRTGLVTDLLDERMLASGDADVYLCGPVAMVDAARTWLDHN GFHRVGLYYEKFVASGAARRRTPARLDYAGVDIAEVCRRGRGTAVVIGGSIAGIAAAKMLSETFDRVIVLEKDGPHRRRE GRPGAAQGWHLHHLLTAGQIELERIFPGIVDDMVREGAFKVDMAAQYRIRLGGTWKKPGTSDIEIVCAGRPLLEWCVRRR LDDEPRIDFRYESEVADLAFDRANNAIVGVAVDNGDADGGDGLQVVPAEFVVDASGKNTRVPEFLERLGVGAPEAEQDII NCFYSTMQHRVPPERRWQDKVMVICYAYRPFEDTYAAQYYTDSSRTILSTSLVAYNCYSPPRTAREFRAFADLMPSPVIG ENIDGLEPASPIYNFRYPNMLRLRYEKKRNLPRALLAVGDAYTSADPVSGLGMSLALKEVREMQALLAKYGAGHRDLPRR YYRAIAKMADTAWFVIREQNLRFDWMKDVDKKRPFYFGVLTWYMDRVLELVHDDLDAYREFLAVVHLVKPPSALMRPRIA SRVLGKWARTRLSGQKTLIARNYENHPIPAEPADQLVNA
Sequences:
>Translated_839_residues MAVRQVTVGYSDGTHKTMPVRCDQTVLDAAEEHGVAIVNECQSGICGTCVATCTAGRYQMGRTEGLSDVERAARKILTCQ TFVTSDCRIELQYPVDDNAALLVTGDGVVTAVELVSPSTAILRVDTSGMAGALRYRAGQFAQLQVPGTNVWRNYSYAHPA DGRGECEFIIRLLPDGVMSNYLRDRAQPGDHIALRCSKGSFYLRPIVRPVILVAGGTGLSAILAMAQSLDADVAHPVYLL YGVERTEDLCKLDELTELRRRVGRLEVHVVVARPDPDWDGRTGLVTDLLDERMLASGDADVYLCGPVAMVDAARTWLDHN GFHRVGLYYEKFVASGAARRRTPARLDYAGVDIAEVCRRGRGTAVVIGGSIAGIAAAKMLSETFDRVIVLEKDGPHRRRE GRPGAAQGWHLHHLLTAGQIELERIFPGIVDDMVREGAFKVDMAAQYRIRLGGTWKKPGTSDIEIVCAGRPLLEWCVRRR LDDEPRIDFRYESEVADLAFDRANNAIVGVAVDNGDADGGDGLQVVPAEFVVDASGKNTRVPEFLERLGVGAPEAEQDII NCFYSTMQHRVPPERRWQDKVMVICYAYRPFEDTYAAQYYTDSSRTILSTSLVAYNCYSPPRTAREFRAFADLMPSPVIG ENIDGLEPASPIYNFRYPNMLRLRYEKKRNLPRALLAVGDAYTSADPVSGLGMSLALKEVREMQALLAKYGAGHRDLPRR YYRAIAKMADTAWFVIREQNLRFDWMKDVDKKRPFYFGVLTWYMDRVLELVHDDLDAYREFLAVVHLVKPPSALMRPRIA SRVLGKWARTRLSGQKTLIARNYENHPIPAEPADQLVNA >Mature_838_residues AVRQVTVGYSDGTHKTMPVRCDQTVLDAAEEHGVAIVNECQSGICGTCVATCTAGRYQMGRTEGLSDVERAARKILTCQT FVTSDCRIELQYPVDDNAALLVTGDGVVTAVELVSPSTAILRVDTSGMAGALRYRAGQFAQLQVPGTNVWRNYSYAHPAD GRGECEFIIRLLPDGVMSNYLRDRAQPGDHIALRCSKGSFYLRPIVRPVILVAGGTGLSAILAMAQSLDADVAHPVYLLY GVERTEDLCKLDELTELRRRVGRLEVHVVVARPDPDWDGRTGLVTDLLDERMLASGDADVYLCGPVAMVDAARTWLDHNG FHRVGLYYEKFVASGAARRRTPARLDYAGVDIAEVCRRGRGTAVVIGGSIAGIAAAKMLSETFDRVIVLEKDGPHRRREG RPGAAQGWHLHHLLTAGQIELERIFPGIVDDMVREGAFKVDMAAQYRIRLGGTWKKPGTSDIEIVCAGRPLLEWCVRRRL DDEPRIDFRYESEVADLAFDRANNAIVGVAVDNGDADGGDGLQVVPAEFVVDASGKNTRVPEFLERLGVGAPEAEQDIIN CFYSTMQHRVPPERRWQDKVMVICYAYRPFEDTYAAQYYTDSSRTILSTSLVAYNCYSPPRTAREFRAFADLMPSPVIGE NIDGLEPASPIYNFRYPNMLRLRYEKKRNLPRALLAVGDAYTSADPVSGLGMSLALKEVREMQALLAKYGAGHRDLPRRY YRAIAKMADTAWFVIREQNLRFDWMKDVDKKRPFYFGVLTWYMDRVLELVHDDLDAYREFLAVVHLVKPPSALMRPRIAS RVLGKWARTRLSGQKTLIARNYENHPIPAEPADQLVNA
Specific function: Electron transfer component of benzoate 1,2-dioxygenase system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding FR-type domain [H]
Homologues:
Organism=Escherichia coli, GI2367314, Length=212, Percent_Identity=27.8301886792453, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6323552, Length=232, Percent_Identity=24.1379310344828, Blast_Score=68, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6323510, Length=219, Percent_Identity=26.9406392694064, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006058 - InterPro: IPR012675 - InterPro: IPR017927 - InterPro: IPR001041 - InterPro: IPR001709 - InterPro: IPR008333 - InterPro: IPR001433 - InterPro: IPR001221 - InterPro: IPR017938 [H]
Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]
EC number: =1.18.1.3 [H]
Molecular weight: Translated: 93430; Mature: 93299
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVRQVTVGYSDGTHKTMPVRCDQTVLDAAEEHGVAIVNECQSGICGTCVATCTAGRYQM CCCEEEEEECCCCCCCCCCEECCHHHHHHHHHCCEEEEHHHCCCCCHHHHHHHCCCCCCC GRTEGLSDVERAARKILTCQTFVTSDCRIELQYPVDDNAALLVTGDGVVTAVELVSPSTA CCCCCHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCEE ILRVDTSGMAGALRYRAGQFAQLQVPGTNVWRNYSYAHPADGRGECEFIIRLLPDGVMSN EEEEECCCCHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHH YLRDRAQPGDHIALRCSKGSFYLRPIVRPVILVAGGTGLSAILAMAQSLDADVAHPVYLL HHHHHCCCCCEEEEEECCCCEEHHHHCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEE YGVERTEDLCKLDELTELRRRVGRLEVHVVVARPDPDWDGRTGLVTDLLDERMLASGDAD EECHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC VYLCGPVAMVDAARTWLDHNGFHRVGLYYEKFVASGAARRRTPARLDYAGVDIAEVCRRG EEEECCHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHHCC RGTAVVIGGSIAGIAAAKMLSETFDRVIVLEKDGPHRRREGRPGAAQGWHLHHLLTAGQI CCCEEEECCCHHHHHHHHHHHHHHCEEEEEECCCCCHHHCCCCCCCCCCCHHHHHCCCCE ELERIFPGIVDDMVREGAFKVDMAAQYRIRLGGTWKKPGTSDIEIVCAGRPLLEWCVRRR EHHHHCCHHHHHHHHCCCEEEEEEEEEEEEECCEECCCCCCCEEEEECCCHHHHHHHHHC LDDEPRIDFRYESEVADLAFDRANNAIVGVAVDNGDADGGDGLQVVPAEFVVDASGKNTR CCCCCCCCEEECCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEECCEEEEECCCCCCC VPEFLERLGVGAPEAEQDIINCFYSTMQHRVPPERRWQDKVMVICYAYRPFEDTYAAQYY CHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCEEEEEEEECCCCCCCEEEEE TDSSRTILSTSLVAYNCYSPPRTAREFRAFADLMPSPVIGENIDGLEPASPIYNFRYPNM ECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC LRLRYEKKRNLPRALLAVGDAYTSADPVSGLGMSLALKEVREMQALLAKYGAGHRDLPRR EEEEEHHHCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH YYRAIAKMADTAWFVIREQNLRFDWMKDVDKKRPFYFGVLTWYMDRVLELVHDDLDAYRE HHHHHHHHHCCEEEEEEECCCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHH FLAVVHLVKPPSALMRPRIASRVLGKWARTRLSGQKTLIARNYENHPIPAEPADQLVNA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCC >Mature Secondary Structure AVRQVTVGYSDGTHKTMPVRCDQTVLDAAEEHGVAIVNECQSGICGTCVATCTAGRYQM CCEEEEEECCCCCCCCCCEECCHHHHHHHHHCCEEEEHHHCCCCCHHHHHHHCCCCCCC GRTEGLSDVERAARKILTCQTFVTSDCRIELQYPVDDNAALLVTGDGVVTAVELVSPSTA CCCCCHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCEE ILRVDTSGMAGALRYRAGQFAQLQVPGTNVWRNYSYAHPADGRGECEFIIRLLPDGVMSN EEEEECCCCHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHH YLRDRAQPGDHIALRCSKGSFYLRPIVRPVILVAGGTGLSAILAMAQSLDADVAHPVYLL HHHHHCCCCCEEEEEECCCCEEHHHHCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEE YGVERTEDLCKLDELTELRRRVGRLEVHVVVARPDPDWDGRTGLVTDLLDERMLASGDAD EECHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC VYLCGPVAMVDAARTWLDHNGFHRVGLYYEKFVASGAARRRTPARLDYAGVDIAEVCRRG EEEECCHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHHCC RGTAVVIGGSIAGIAAAKMLSETFDRVIVLEKDGPHRRREGRPGAAQGWHLHHLLTAGQI CCCEEEECCCHHHHHHHHHHHHHHCEEEEEECCCCCHHHCCCCCCCCCCCHHHHHCCCCE ELERIFPGIVDDMVREGAFKVDMAAQYRIRLGGTWKKPGTSDIEIVCAGRPLLEWCVRRR EHHHHCCHHHHHHHHCCCEEEEEEEEEEEEECCEECCCCCCCEEEEECCCHHHHHHHHHC LDDEPRIDFRYESEVADLAFDRANNAIVGVAVDNGDADGGDGLQVVPAEFVVDASGKNTR CCCCCCCCEEECCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEECCEEEEECCCCCCC VPEFLERLGVGAPEAEQDIINCFYSTMQHRVPPERRWQDKVMVICYAYRPFEDTYAAQYY CHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCEEEEEEEECCCCCCCEEEEE TDSSRTILSTSLVAYNCYSPPRTAREFRAFADLMPSPVIGENIDGLEPASPIYNFRYPNM ECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC LRLRYEKKRNLPRALLAVGDAYTSADPVSGLGMSLALKEVREMQALLAKYGAGHRDLPRR EEEEEHHHCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH YYRAIAKMADTAWFVIREQNLRFDWMKDVDKKRPFYFGVLTWYMDRVLELVHDDLDAYRE HHHHHHHHHCCEEEEEEECCCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHH FLAVVHLVKPPSALMRPRIASRVLGKWARTRLSGQKTLIARNYENHPIPAEPADQLVNA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1885518 [H]