Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 121637288

GI number: 121637288

Start: 1551807

End: 1552730

Strand: Reverse

Name: yciR [C]

Synonym: BCG_1419c

Alternate gene names: 121637288

Gene position: 1552730-1551807 (Counterclockwise)

Preceding gene: 121637292

Following gene: 121637287

Centisome position: 35.49

GC content: 62.34

Gene sequence:

>924_bases
ATGGATCGTTGTTGTCAGCGCGCTACAGCGTTCGCTTGCGCGCTCAGGCCGACCAAGTTGATCGACTACGAAGAGATGTT
TAGGGGCGCGATGCAAGCGCGAGCGATGGTAGCCAATCCTGACCAATGGGCGGACTCCGACCGCGACCAGGTCAACACTC
GCCATTATCTGTCCACTTCGATGCGCGTGGCACTGGATCGCGGTGAATTCTTCCTCGTCTACCAGCCAATCATCCGGCTT
GCCGACAACCGCATCATCGGCGCCGAGGCCCTGCTGCGCTGGGAACACCCGACGTTGGGCACGCTACTCCCGGGCCGGTT
CATCGACCGTGCCGAGAACAACGGACTGATGGTGCCGCTCACGGCCTTCGTGCTCGAGCAGGCCTGCCGCCACGTCCGCA
GTTGGCGTGACCACAGCACCGACCCGCAACCGTTTGTCAGCGTCAACGTCTCCGCCAGCACCATCTGCGATCCCGGCTTC
CTGGTGCTGGTCGAAGGTGTGCTCGGCGAAACCGGCCTGCCCGCCCATGCCCTGCAGCTCGAACTGGCCGAGGACGCGCG
CCTTAGCAGAGACGAGAAGGCGGTGACCAGGCTACAAGAATTGTCCGCTCTCGGCGTCGGCATCGCCATCGACGACTTCG
GCATTGGATTCTCCAGCCTCGCCTACCTTCCCCGCCTCCCCGTCGACGTGGTCAAACTCGGGGGAAAGTTCATCGAGTGC
CTCGATGGCGACATTCAAGCTCGGCTGGCCAACGAACAGATCACCCGGGCAATGATCGACCTTGGCGACAAGCTCGGTAT
CACCGTCACTGCAAAGCTAGTCGAAAGCCCCAGCCAAGCCGCCCGGTTGCGCGCCTTCGGCTGTAAAGCCGCACAAGGCT
GGCACTTTGCCAAGGCACTGCCGGTCGACTTTTTCAGAGAGTAG

Upstream 100 bases:

>100_bases
TGCGACGGTTCGGGTCAAGACGACTTCGGTGGTGTGCTTCGCGTTGCCACCGCGGTCGGCGAGGTGCCCACCGGGCTGTG
AATCCTGATGCAGCCCTTGG

Downstream 100 bases:

>100_bases
GTCGCGTGGGTGTAGATCGATGGCAACGGCGTGTTTCACCAAGCCGTAGAACAGTATGCCCCGCACGCATGAGAGGTGGG
TGGGACCGGTTGAATCGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MDRCCQRATAFACALRPTKLIDYEEMFRGAMQARAMVANPDQWADSDRDQVNTRHYLSTSMRVALDRGEFFLVYQPIIRL
ADNRIIGAEALLRWEHPTLGTLLPGRFIDRAENNGLMVPLTAFVLEQACRHVRSWRDHSTDPQPFVSVNVSASTICDPGF
LVLVEGVLGETGLPAHALQLELAEDARLSRDEKAVTRLQELSALGVGIAIDDFGIGFSSLAYLPRLPVDVVKLGGKFIEC
LDGDIQARLANEQITRAMIDLGDKLGITVTAKLVESPSQAARLRAFGCKAAQGWHFAKALPVDFFRE

Sequences:

>Translated_307_residues
MDRCCQRATAFACALRPTKLIDYEEMFRGAMQARAMVANPDQWADSDRDQVNTRHYLSTSMRVALDRGEFFLVYQPIIRL
ADNRIIGAEALLRWEHPTLGTLLPGRFIDRAENNGLMVPLTAFVLEQACRHVRSWRDHSTDPQPFVSVNVSASTICDPGF
LVLVEGVLGETGLPAHALQLELAEDARLSRDEKAVTRLQELSALGVGIAIDDFGIGFSSLAYLPRLPVDVVKLGGKFIEC
LDGDIQARLANEQITRAMIDLGDKLGITVTAKLVESPSQAARLRAFGCKAAQGWHFAKALPVDFFRE
>Mature_307_residues
MDRCCQRATAFACALRPTKLIDYEEMFRGAMQARAMVANPDQWADSDRDQVNTRHYLSTSMRVALDRGEFFLVYQPIIRL
ADNRIIGAEALLRWEHPTLGTLLPGRFIDRAENNGLMVPLTAFVLEQACRHVRSWRDHSTDPQPFVSVNVSASTICDPGF
LVLVEGVLGETGLPAHALQLELAEDARLSRDEKAVTRLQELSALGVGIAIDDFGIGFSSLAYLPRLPVDVVKLGGKFIEC
LDGDIQARLANEQITRAMIDLGDKLGITVTAKLVESPSQAARLRAFGCKAAQGWHFAKALPVDFFRE

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=250, Percent_Identity=34.4, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI87081921, Length=256, Percent_Identity=32.8125, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1790496, Length=256, Percent_Identity=32.8125, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI226510982, Length=289, Percent_Identity=30.7958477508651, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787055, Length=258, Percent_Identity=31.3953488372093, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1788502, Length=258, Percent_Identity=31.3953488372093, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87081845, Length=245, Percent_Identity=33.8775510204082, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI87081743, Length=249, Percent_Identity=31.7269076305221, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI87081980, Length=253, Percent_Identity=33.596837944664, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786507, Length=256, Percent_Identity=27.734375, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788849, Length=239, Percent_Identity=28.0334728033473, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082096, Length=254, Percent_Identity=26.3779527559055, Blast_Score=88, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 33968; Mature: 33968

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRCCQRATAFACALRPTKLIDYEEMFRGAMQARAMVANPDQWADSDRDQVNTRHYLSTS
CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCHHHHCHHHHHHHH
MRVALDRGEFFLVYQPIIRLADNRIIGAEALLRWEHPTLGTLLPGRFIDRAENNGLMVPL
HEEEEECCCEEEEEHHHHHHHCCCEECHHHHEEECCCCCCCCCCCHHHHHCCCCCEEEHH
TAFVLEQACRHVRSWRDHSTDPQPFVSVNVSASTICDPGFLVLVEGVLGETGLPAHALQL
HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHCCCCCHHEEEEHHHCCCCCCHHHEEE
ELAEDARLSRDEKAVTRLQELSALGVGIAIDDFGIGFSSLAYLPRLPVDVVKLGGKFIEC
EEHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHCCCCCHHHHHHCCHHHHH
LDGDIQARLANEQITRAMIDLGDKLGITVTAKLVESPSQAARLRAFGCKAAQGWHFAKAL
CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHCCCCCCCCCHHHHC
PVDFFRE
CHHHHCC
>Mature Secondary Structure
MDRCCQRATAFACALRPTKLIDYEEMFRGAMQARAMVANPDQWADSDRDQVNTRHYLSTS
CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCHHHHCHHHHHHHH
MRVALDRGEFFLVYQPIIRLADNRIIGAEALLRWEHPTLGTLLPGRFIDRAENNGLMVPL
HEEEEECCCEEEEEHHHHHHHCCCEECHHHHEEECCCCCCCCCCCHHHHHCCCCCEEEHH
TAFVLEQACRHVRSWRDHSTDPQPFVSVNVSASTICDPGFLVLVEGVLGETGLPAHALQL
HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHCCCCCHHEEEEHHHCCCCCCHHHEEE
ELAEDARLSRDEKAVTRLQELSALGVGIAIDDFGIGFSSLAYLPRLPVDVVKLGGKFIEC
EEHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHCCCCCHHHHHHCCHHHHH
LDGDIQARLANEQITRAMIDLGDKLGITVTAKLVESPSQAARLRAFGCKAAQGWHFAKAL
CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHCCCCCCCCCHHHHC
PVDFFRE
CHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]