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The map label for this gene is xseB

Identifier: 121637038

GI number: 121637038

Start: 1265381

End: 1265638

Strand: Reverse

Name: xseB

Synonym: BCG_1167c

Alternate gene names: 121637038

Gene position: 1265638-1265381 (Counterclockwise)

Preceding gene: 121637039

Following gene: 121637037

Centisome position: 28.93

GC content: 62.4

Gene sequence:

>258_bases
ATGGTCTGTGACCCCAACGGCGATGACACGGGCAGAACCCACGCAACTGTGCCTGTCAGTCAGCTTGGCTATGAAGCCTG
CCGGGACGAGCTGATGGAAGTCGTGCGGCTTCTGGAGCAGGGCGGATTGGACCTCGATGCGTCGCTGCGACTGTGGGAAA
GAGGGGAGCAACTCGCCAAAAGGTGCGAGGAGCACTTAGCTGGTGCACGCCAGCGGGTGTCCGATGTGCTGGCCGGCGAC
GAGGCCCAAAACGGCTAA

Upstream 100 bases:

>100_bases
CCACAGGTGCTGCGGTCGGTCCACGACGCACCGGAAGGCACCAAGCTGCGCGTGCGGGTTGCCGACGGAGCCCTAGCGGC
GGTCAGTGAAGGACAAACCA

Downstream 100 bases:

>100_bases
GGCAAGGTTATGCTTCGCCGCATGGGTGATGCATCGCTGACAACCGAGCTCGGCCGCGTTCTGGTCACCGGCGGCGCGGG
CTTCGTGGGCGCCAACCTGG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVLAGD
EAQNG

Sequences:

>Translated_85_residues
MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVLAGD
EAQNG
>Mature_85_residues
MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVLAGD
EAQNG

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_MYCBO (P67457)

Other databases:

- EMBL:   BX248337
- RefSeq:   NP_854793.1
- ProteinModelPortal:   P67457
- SMR:   P67457
- EnsemblBacteria:   EBMYCT00000014574
- GeneID:   1090459
- GenomeReviews:   BX248333_GR
- KEGG:   mbo:Mb1137c
- GeneTree:   EBGT00050000017079
- HOGENOM:   HBG728416
- OMA:   TSLKLWE
- ProtClustDB:   PRK00977
- BioCyc:   MBOV233413:MB1137C-MONOMER
- BRENDA:   3.1.11.6
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9322; Mature: 9322

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAK
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
RCEEHLAGARQRVSDVLAGDEAQNG
HHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAK
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
RCEEHLAGARQRVSDVLAGDEAQNG
HHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972