| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is gsiB [H]
Identifier: 121610359
GI number: 121610359
Start: 3798824
End: 3800404
Strand: Direct
Name: gsiB [H]
Synonym: Veis_3427
Alternate gene names: 121610359
Gene position: 3798824-3800404 (Clockwise)
Preceding gene: 121610358
Following gene: 121610360
Centisome position: 68.24
GC content: 64.77
Gene sequence:
>1581_bases ATGAGTCAGCGTCGAGATGACAGGGTTTCACGGCTTCCTTCGAGCGCCTTGCAGCGCCGCGACGCTTTGGGCCTGGCGGG CTTGGGTCTGGCGGGCCTGGGCCTGGGCTGGCCCGTGTTCGCGCAGACCGCGCCGAAGAAGGGTGGCGTGCTGAGGATCG CGAGTCCGGCCAATCCTTCGAGTCTCGACCCGGCGGTGGGTGGCGCCGGCTCCGACCATGCCATCTTGTGGACGATGTAC GACACGCTGGTCGAATGGGACTACGCCACACTCAAGCCCAAGCCCGGCATGGCCGAATGGATCTTTCCGGACCCGAAGAC CATGCTGCTGCGCATCAAGCCGGGCATCTCGTTTCATGACGGCACGCCGTGCGACGCCGAGGCCGTGCGCTGGAACATCG AGCGCAATCGCGGCGATGCGGCCTCGAACCTGAAGGCCGACCTGTCGAGCATCGAGGCCAGCGCCGTCGTCAGCCCGACG CAGGTCAAGCTCATGCTCGACCAACCCGACGCGGCGCTCCCCGCCGTCTTTTCCGACCGTGCGGGCATGATGGTTTCGCC CACGGCCCAGAAGGCGGCGGGCAAGGCTTTCGGCCGCAATCCGGTGGGCGCAGGGCCGTGGCGGTTTGTCAGTTGGGCCG ACAACCAAAAGGTGATCGTCACGCGCCACGCGCAGTACTGGCGCACCGGCCTGCCGTACCTCGACGGCATCGAGTTTTCG ATCATTCCCGAACTGGCCACCGGCCTGCGCTCGGTGGTGTCCCGGCAGAACGATCTGGCCTACCAGCTATCGGCGCGCTA CCGCCCGATCATTACGCGCGAGAAGGCGCTCCGGCTGGTGACAGGCCCCACGCTCTACTGCATACAGCTGTACATGAATT ACGCGCGGGCGCCGCTGGACAACCCGAAGCTGCGGCAGGCGATCAACTTCGCGCTGAACCGCGAGGCTTTCGTCAAGGCC ACGATGGACGGTGTTGGCGAGCCCGCGCATATGAACCTGCCGAGCACCCACTGGGCCTACGACAAGAGCGTGGCCGGCCT GTATCCGCATGACGTGGCAAAGGCCAGGCAACTGATGGCCGACGCCGGGCTGGCCGCCGGCATCGATCTGACGATCGGCG GCTACACCGACCAGGACGCAGTGCGCCGCGGCGAAATCGTGATGGATCAACTCGGCAAGATCGGCATCCGCCTGAAGTTC ACGAACGGCACGATCCCCGAGATCAGCGGCCAGTTCTTCGGCACAGAAAAGAAGTTCGACATGCTGCTGTCGGCCTGGAC TGGCCGCCCCGACCCGAGCATGAGCTACTCGCTGATGTACGCCAAGGGCGCCTACTACAACGCCGGGCGCAGCGAGTTCT CGCCGGAACTCTCGGCACTGCTGCAGGAAAGCCGCGCCAGGGAAGATATCCAGTGGCGCAAAAGCGTGTTCGCCAAAATC CAGCGCATGGTGATGGAAAACGCGCTGGTGGCGCCGCTGGCCTTTCAATTCGAGATCGACGCCTTGTCCAACGCGGTGCA GGGCTTCGTTCCGAATCTGCTGGGCAAGCCGAAATTCAACAACCTGTCCTTGTCCGGCTGA
Upstream 100 bases:
>100_bases CGGCGGCAGGGCCGCCCGCAGGCAACGGCGGCGCGGCCGCCGGTTGCCATCGCCCCGGCACCACCGACCACGGCATCGTT CACACCGCATGGGAGACAGC
Downstream 100 bases:
>100_bases TGTCCGCAGACAAGACCACGGCGGCCGACGGCAGCGCGTTGCGCCGCCTGTGCCGCCTGCGCCACCACCTGCTCGCGCGC CGGCTGATGCAGGCTTTGCC
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 526; Mature: 525
Protein sequence:
>526_residues MSQRRDDRVSRLPSSALQRRDALGLAGLGLAGLGLGWPVFAQTAPKKGGVLRIASPANPSSLDPAVGGAGSDHAILWTMY DTLVEWDYATLKPKPGMAEWIFPDPKTMLLRIKPGISFHDGTPCDAEAVRWNIERNRGDAASNLKADLSSIEASAVVSPT QVKLMLDQPDAALPAVFSDRAGMMVSPTAQKAAGKAFGRNPVGAGPWRFVSWADNQKVIVTRHAQYWRTGLPYLDGIEFS IIPELATGLRSVVSRQNDLAYQLSARYRPIITREKALRLVTGPTLYCIQLYMNYARAPLDNPKLRQAINFALNREAFVKA TMDGVGEPAHMNLPSTHWAYDKSVAGLYPHDVAKARQLMADAGLAAGIDLTIGGYTDQDAVRRGEIVMDQLGKIGIRLKF TNGTIPEISGQFFGTEKKFDMLLSAWTGRPDPSMSYSLMYAKGAYYNAGRSEFSPELSALLQESRAREDIQWRKSVFAKI QRMVMENALVAPLAFQFEIDALSNAVQGFVPNLLGKPKFNNLSLSG
Sequences:
>Translated_526_residues MSQRRDDRVSRLPSSALQRRDALGLAGLGLAGLGLGWPVFAQTAPKKGGVLRIASPANPSSLDPAVGGAGSDHAILWTMY DTLVEWDYATLKPKPGMAEWIFPDPKTMLLRIKPGISFHDGTPCDAEAVRWNIERNRGDAASNLKADLSSIEASAVVSPT QVKLMLDQPDAALPAVFSDRAGMMVSPTAQKAAGKAFGRNPVGAGPWRFVSWADNQKVIVTRHAQYWRTGLPYLDGIEFS IIPELATGLRSVVSRQNDLAYQLSARYRPIITREKALRLVTGPTLYCIQLYMNYARAPLDNPKLRQAINFALNREAFVKA TMDGVGEPAHMNLPSTHWAYDKSVAGLYPHDVAKARQLMADAGLAAGIDLTIGGYTDQDAVRRGEIVMDQLGKIGIRLKF TNGTIPEISGQFFGTEKKFDMLLSAWTGRPDPSMSYSLMYAKGAYYNAGRSEFSPELSALLQESRAREDIQWRKSVFAKI QRMVMENALVAPLAFQFEIDALSNAVQGFVPNLLGKPKFNNLSLSG >Mature_525_residues SQRRDDRVSRLPSSALQRRDALGLAGLGLAGLGLGWPVFAQTAPKKGGVLRIASPANPSSLDPAVGGAGSDHAILWTMYD TLVEWDYATLKPKPGMAEWIFPDPKTMLLRIKPGISFHDGTPCDAEAVRWNIERNRGDAASNLKADLSSIEASAVVSPTQ VKLMLDQPDAALPAVFSDRAGMMVSPTAQKAAGKAFGRNPVGAGPWRFVSWADNQKVIVTRHAQYWRTGLPYLDGIEFSI IPELATGLRSVVSRQNDLAYQLSARYRPIITREKALRLVTGPTLYCIQLYMNYARAPLDNPKLRQAINFALNREAFVKAT MDGVGEPAHMNLPSTHWAYDKSVAGLYPHDVAKARQLMADAGLAAGIDLTIGGYTDQDAVRRGEIVMDQLGKIGIRLKFT NGTIPEISGQFFGTEKKFDMLLSAWTGRPDPSMSYSLMYAKGAYYNAGRSEFSPELSALLQESRAREDIQWRKSVFAKIQ RMVMENALVAPLAFQFEIDALSNAVQGFVPNLLGKPKFNNLSLSG
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=500, Percent_Identity=27, Blast_Score=164, Evalue=9e-42, Organism=Escherichia coli, GI1789966, Length=544, Percent_Identity=24.6323529411765, Blast_Score=139, Evalue=6e-34, Organism=Escherichia coli, GI1787762, Length=512, Percent_Identity=25.9765625, Blast_Score=116, Evalue=3e-27, Organism=Escherichia coli, GI1787551, Length=533, Percent_Identity=22.5140712945591, Blast_Score=89, Evalue=6e-19, Organism=Escherichia coli, GI1789887, Length=433, Percent_Identity=23.5565819861432, Blast_Score=69, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 57578; Mature: 57446
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRRDDRVSRLPSSALQRRDALGLAGLGLAGLGLGWPVFAQTAPKKGGVLRIASPANPS CCCCCHHHHHHCCHHHHHHHHCCCCCCCCHHHCCCCCHHHHCCCCCCCCEEEEECCCCCC SLDPAVGGAGSDHAILWTMYDTLVEWDYATLKPKPGMAEWIFPDPKTMLLRIKPGISFHD CCCCCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCEECCCCCEEEEEECCCCCCCC GTPCDAEAVRWNIERNRGDAASNLKADLSSIEASAVVSPTQVKLMLDQPDAALPAVFSDR CCCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCCHHHCCC AGMMVSPTAQKAAGKAFGRNPVGAGPWRFVSWADNQKVIVTRHAQYWRTGLPYLDGIEFS CCEEECCCHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHCCCCCCCCCCEE IIPELATGLRSVVSRQNDLAYQLSARYRPIITREKALRLVTGPTLYCIQLYMNYARAPLD EHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEHHHHHEEECCCHHHHHHHHHHHHHCCCC NPKLRQAINFALNREAFVKATMDGVGEPAHMNLPSTHWAYDKSVAGLYPHDVAKARQLMA CHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH DAGLAAGIDLTIGGYTDQDAVRRGEIVMDQLGKIGIRLKFTNGTIPEISGQFFGTEKKFD HCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHH MLLSAWTGRPDPSMSYSLMYAKGAYYNAGRSEFSPELSALLQESRAREDIQWRKSVFAKI HHHHHHCCCCCCCCEEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QRMVMENALVAPLAFQFEIDALSNAVQGFVPNLLGKPKFNNLSLSG HHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SQRRDDRVSRLPSSALQRRDALGLAGLGLAGLGLGWPVFAQTAPKKGGVLRIASPANPS CCCCHHHHHHCCHHHHHHHHCCCCCCCCHHHCCCCCHHHHCCCCCCCCEEEEECCCCCC SLDPAVGGAGSDHAILWTMYDTLVEWDYATLKPKPGMAEWIFPDPKTMLLRIKPGISFHD CCCCCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCEECCCCCEEEEEECCCCCCCC GTPCDAEAVRWNIERNRGDAASNLKADLSSIEASAVVSPTQVKLMLDQPDAALPAVFSDR CCCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCCHHHCCC AGMMVSPTAQKAAGKAFGRNPVGAGPWRFVSWADNQKVIVTRHAQYWRTGLPYLDGIEFS CCEEECCCHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHCCCCCCCCCCEE IIPELATGLRSVVSRQNDLAYQLSARYRPIITREKALRLVTGPTLYCIQLYMNYARAPLD EHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEHHHHHEEECCCHHHHHHHHHHHHHCCCC NPKLRQAINFALNREAFVKATMDGVGEPAHMNLPSTHWAYDKSVAGLYPHDVAKARQLMA CHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH DAGLAAGIDLTIGGYTDQDAVRRGEIVMDQLGKIGIRLKFTNGTIPEISGQFFGTEKKFD HCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHH MLLSAWTGRPDPSMSYSLMYAKGAYYNAGRSEFSPELSALLQESRAREDIQWRKSVFAKI HHHHHHCCCCCCCCEEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QRMVMENALVAPLAFQFEIDALSNAVQGFVPNLLGKPKFNNLSLSG HHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA