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The map label for this gene is ypdC [C]

Identifier: 121610136

GI number: 121610136

Start: 3561664

End: 3562788

Strand: Direct

Name: ypdC [C]

Synonym: Veis_3195

Alternate gene names: 121610136

Gene position: 3561664-3562788 (Clockwise)

Preceding gene: 121610135

Following gene: 121610137

Centisome position: 63.98

GC content: 68.0

Gene sequence:

>1125_bases
ATGACAGCCAGTCTCGTCGTGGGGGCGATCAGCCTCGAAGCAACCCGGTTGGCTGCGAACCGGCTTGGAGTGCTGCTGCG
CGGCAGCCGGTGCGGGGAGATCGTGCGCGAGCTTGCCAGCGCCCGCACGATCCGCAGTGCCGAGACCCTGATCCCGTCCG
CGCGACGCACCGCCTCGCTGCTGCACTTTACGAGCCTGCTCGAAATCGCGGCCAAGGAAAGCGGGCGCATTCACCTGGGC
CTGGACATGGCCGGGGCCGATCCGCCGCACGAGGTTGGCATCGTGAGCGGCCTGTTCCTCTACGCATCGACCGTGGGCCA
GGCGCTGGAAGATTTGGTGCGGTTCTTTCCCATCATCCAGACCGGCACGACAGTCCGGCTCGCCTGCGAACAGGGCATCG
CGCGTTTCATCTACAGCATCCAGGACCCGAGCATCAGCGACCGGTTGCAAGACGCGGCCTACACGCTCGGCAAGATCTGC
CGGTCGCTGCGCCGGGCCACGGGCGATGCGTGGTCGCTCGAGCAGGTGACGATGGCGATGCCTGCCCCGGCCTCGTTGCA
GGCCTACACCCGCTTCTTCCGTGCCCCGGTGGTTTTCAACGCACAAGCCACCGCGCTGTGCTTTCCCGCAGCGTTTCTTG
CGCTGCCCATTCGCACCGCCAACGCCGAGCGCTACGGCAACTTCTGCGCAGGCATGGCCAAAGCCTTGCCGGCAAACGAA
GACCCCGGCCTGCTGGAAGATGCGCTTCGGGCCTGGATGAAGCAGGTGCTGCGCGAGTCGGGCGCCACGCTCGAACACGC
GGCGGCCGACTTCGGCATCACGCCACGCACGCTGCAGCGGCGCTTGCGCGGCCTGGGCATCGGCTTTGTCGATCTGCGCG
CGCAGGTGCGCATGGAGACCGCGCGCCGCATGCTCGTCGACAGCCACCTGTCGGTGACGTGCATCGCCGAGCAGCTCGGC
TTCAGCGAACCCAGCGCCTTCACGCGCGCTTTCCGCCGGCACACGCGCCAGAGCCCACGCGCGTTCCGCCAGGCCGCAGC
GTGCCTTCCCGGAGGTGCCGCGCGCGACATGCGCGGCGATTGTCGCGTCCAGTCAAGTTTTCTCCGGATGCCCGGGCTAA
GCTGA

Upstream 100 bases:

>100_bases
CCAGGCCAGGCTCTGTCAGAATCCGGCATCGATCACGGGACTTGGGACGTGAAATCATTCGGGCCAGGCCCCGTGCGGTA
CATCGACCCGGGAATCATCT

Downstream 100 bases:

>100_bases
CCCTAGTGTCGCGTTACCGATCATCTGTCGGTCTGCGCTGGCCATCGAAGCGCATCGCGGCGTTGCATCGCTTGCCAATA
CGCTCGGTATGGGCGGCGCG

Product: Fis family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; AraC Family Regulatory Protein; AraC Family Transcription Regulator Protein; Transcriptional Regulator OruR; Helix-Turn-Helix AraC Domain Protein; Transcriptional Regulator Fis Family; Transcriptional Regulatory Protein; AraC/XylS Family Transcription Factor; Bacterial Regulatory Helix-Turn-Helix Protein; Transcriptional Regulator AraC; Fis Family Transcriptional Regulator; Transcriptional Regulator Arac Family; Ornithine Utilization Regulator

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MTASLVVGAISLEATRLAANRLGVLLRGSRCGEIVRELASARTIRSAETLIPSARRTASLLHFTSLLEIAAKESGRIHLG
LDMAGADPPHEVGIVSGLFLYASTVGQALEDLVRFFPIIQTGTTVRLACEQGIARFIYSIQDPSISDRLQDAAYTLGKIC
RSLRRATGDAWSLEQVTMAMPAPASLQAYTRFFRAPVVFNAQATALCFPAAFLALPIRTANAERYGNFCAGMAKALPANE
DPGLLEDALRAWMKQVLRESGATLEHAAADFGITPRTLQRRLRGLGIGFVDLRAQVRMETARRMLVDSHLSVTCIAEQLG
FSEPSAFTRAFRRHTRQSPRAFRQAAACLPGGAARDMRGDCRVQSSFLRMPGLS

Sequences:

>Translated_374_residues
MTASLVVGAISLEATRLAANRLGVLLRGSRCGEIVRELASARTIRSAETLIPSARRTASLLHFTSLLEIAAKESGRIHLG
LDMAGADPPHEVGIVSGLFLYASTVGQALEDLVRFFPIIQTGTTVRLACEQGIARFIYSIQDPSISDRLQDAAYTLGKIC
RSLRRATGDAWSLEQVTMAMPAPASLQAYTRFFRAPVVFNAQATALCFPAAFLALPIRTANAERYGNFCAGMAKALPANE
DPGLLEDALRAWMKQVLRESGATLEHAAADFGITPRTLQRRLRGLGIGFVDLRAQVRMETARRMLVDSHLSVTCIAEQLG
FSEPSAFTRAFRRHTRQSPRAFRQAAACLPGGAARDMRGDCRVQSSFLRMPGLS
>Mature_373_residues
TASLVVGAISLEATRLAANRLGVLLRGSRCGEIVRELASARTIRSAETLIPSARRTASLLHFTSLLEIAAKESGRIHLGL
DMAGADPPHEVGIVSGLFLYASTVGQALEDLVRFFPIIQTGTTVRLACEQGIARFIYSIQDPSISDRLQDAAYTLGKICR
SLRRATGDAWSLEQVTMAMPAPASLQAYTRFFRAPVVFNAQATALCFPAAFLALPIRTANAERYGNFCAGMAKALPANED
PGLLEDALRAWMKQVLRESGATLEHAAADFGITPRTLQRRLRGLGIGFVDLRAQVRMETARRMLVDSHLSVTCIAEQLGF
SEPSAFTRAFRRHTRQSPRAFRQAAACLPGGAARDMRGDCRVQSSFLRMPGLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40608; Mature: 40477

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASLVVGAISLEATRLAANRLGVLLRGSRCGEIVRELASARTIRSAETLIPSARRTASL
CCCHHEEEHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LHFTSLLEIAAKESGRIHLGLDMAGADPPHEVGIVSGLFLYASTVGQALEDLVRFFPIIQ
HHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TGTTVRLACEQGIARFIYSIQDPSISDRLQDAAYTLGKICRSLRRATGDAWSLEQVTMAM
CCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC
PAPASLQAYTRFFRAPVVFNAQATALCFPAAFLALPIRTANAERYGNFCAGMAKALPANE
CCCHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
DPGLLEDALRAWMKQVLRESGATLEHAAADFGITPRTLQRRLRGLGIGFVDLRAQVRMET
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
ARRMLVDSHLSVTCIAEQLGFSEPSAFTRAFRRHTRQSPRAFRQAAACLPGGAARDMRGD
HHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCC
CRVQSSFLRMPGLS
HHHHHHHHCCCCCC
>Mature Secondary Structure 
TASLVVGAISLEATRLAANRLGVLLRGSRCGEIVRELASARTIRSAETLIPSARRTASL
CCHHEEEHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LHFTSLLEIAAKESGRIHLGLDMAGADPPHEVGIVSGLFLYASTVGQALEDLVRFFPIIQ
HHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TGTTVRLACEQGIARFIYSIQDPSISDRLQDAAYTLGKICRSLRRATGDAWSLEQVTMAM
CCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC
PAPASLQAYTRFFRAPVVFNAQATALCFPAAFLALPIRTANAERYGNFCAGMAKALPANE
CCCHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
DPGLLEDALRAWMKQVLRESGATLEHAAADFGITPRTLQRRLRGLGIGFVDLRAQVRMET
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
ARRMLVDSHLSVTCIAEQLGFSEPSAFTRAFRRHTRQSPRAFRQAAACLPGGAARDMRGD
HHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCC
CRVQSSFLRMPGLS
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA