| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
Click here to switch to the map view.
The map label for this gene is 121610052
Identifier: 121610052
GI number: 121610052
Start: 3456710
End: 3457276
Strand: Direct
Name: 121610052
Synonym: Veis_3109
Alternate gene names: NA
Gene position: 3456710-3457276 (Clockwise)
Preceding gene: 121610050
Following gene: 121610054
Centisome position: 62.1
GC content: 50.79
Gene sequence:
>567_bases GTGCAAGCGGATCGGGTTGCATGGAAGGAAAGCCAGCCAGCACTTGACGCAACAAAGCTTGTGTTCCTTGATGAGACGGG CACATCCACCAACATGACCCGCACACGAGGCCGTTCGCCGAAGGGACAGCGTTGCATAGCCAGTGTTCCACATGGTCACC GGAAAATCACCACCTTCATTGCCGGCTTGCGGGTAAACGCCGTGACCGCCCCAATGGTCTTGGATGGCCCTATGGATGGC GAAGCATTCCTGGCCTATATACAGCAATTTCTGTGTCCTACGCTGCACCCTGGTGATATCGTGATCGCTGATAATTTGTC CAGCCATAAAGTCTCTGGTGTGCGTGAGGCCATTGAGGGGGTTGGTGCAACATTGCGTTATCTTCCGCCTTACTCACCAG ATTTGAACCCTATCGAAAAATTCTTTTCCAAACTGAAAGCCCTGCTCAGGCAAGCTGAACAGCGTACTGTCGATGGACTT TGGAATACCATCGGGCACCTGCTTGATTGTTTTACACCACAGGAATTGTCCAACTACTTTTCATCTTCTGGATATGTTTC TACTTAA
Upstream 100 bases:
>100_bases GGGATAACGATCAAAGCCCCAGCCCTATGGCACCAACTGAATAAATGGGGTTTGAGCTTTAAAAAAAACTCTGCACGCCA GCGAGCAAGAGCGTAAGGAT
Downstream 100 bases:
>100_bases ATCAAAAATGCTCTATGGATCGGCATGCAGCGCGTGGCCGACTTCGCTGCCGGACTGGACTACGCCAGGGAAATCCAGGC GCTGTGAGATGTGTGCAATC
Product: ISRm2011-2 transposase protein
Products: NA
Alternate protein names: Transposase Of Insertion Sequence; Transposase And Inactivated Derivatives-Like Protein; ISSpo6 Transposase OrfB; LOW QUALITY PROTEIN Transposase; Insertion Sequence Transposase Protein; Transposase For Insertion Sequence Element; ISHde6 Transposase OrfB; Transposase Family Protein; Transposase IS; ISRin2 Transposase OrfB; ISSoc4 Transposase OrfAB; ISHde1 Transposase OrfB; Transposase And Inactivated Derivative; Transposase Fragment
Number of amino acids: Translated: 188; Mature: 188
Protein sequence:
>188_residues MQADRVAWKESQPALDATKLVFLDETGTSTNMTRTRGRSPKGQRCIASVPHGHRKITTFIAGLRVNAVTAPMVLDGPMDG EAFLAYIQQFLCPTLHPGDIVIADNLSSHKVSGVREAIEGVGATLRYLPPYSPDLNPIEKFFSKLKALLRQAEQRTVDGL WNTIGHLLDCFTPQELSNYFSSSGYVST
Sequences:
>Translated_188_residues MQADRVAWKESQPALDATKLVFLDETGTSTNMTRTRGRSPKGQRCIASVPHGHRKITTFIAGLRVNAVTAPMVLDGPMDG EAFLAYIQQFLCPTLHPGDIVIADNLSSHKVSGVREAIEGVGATLRYLPPYSPDLNPIEKFFSKLKALLRQAEQRTVDGL WNTIGHLLDCFTPQELSNYFSSSGYVST >Mature_188_residues MQADRVAWKESQPALDATKLVFLDETGTSTNMTRTRGRSPKGQRCIASVPHGHRKITTFIAGLRVNAVTAPMVLDGPMDG EAFLAYIQQFLCPTLHPGDIVIADNLSSHKVSGVREAIEGVGATLRYLPPYSPDLNPIEKFFSKLKALLRQAEQRTVDGL WNTIGHLLDCFTPQELSNYFSSSGYVST
Specific function: Unknown
COG id: COG3335
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20665; Mature: 20665
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQADRVAWKESQPALDATKLVFLDETGTSTNMTRTRGRSPKGQRCIASVPHGHRKITTFI CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCCCCHHHCCCCCHHHHHHHH AGLRVNAVTAPMVLDGPMDGEAFLAYIQQFLCPTLHPGDIVIADNLSSHKVSGVREAIEG HHHHHCCEECCEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH VGATLRYLPPYSPDLNPIEKFFSKLKALLRQAEQRTVDGLWNTIGHLLDCFTPQELSNYF HCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH SSSGYVST CCCCCCCC >Mature Secondary Structure MQADRVAWKESQPALDATKLVFLDETGTSTNMTRTRGRSPKGQRCIASVPHGHRKITTFI CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCCCCHHHCCCCCHHHHHHHH AGLRVNAVTAPMVLDGPMDGEAFLAYIQQFLCPTLHPGDIVIADNLSSHKVSGVREAIEG HHHHHCCEECCEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH VGATLRYLPPYSPDLNPIEKFFSKLKALLRQAEQRTVDGLWNTIGHLLDCFTPQELSNYF HCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH SSSGYVST CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA