| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121609998
Identifier: 121609998
GI number: 121609998
Start: 3408408
End: 3409214
Strand: Direct
Name: 121609998
Synonym: Veis_3054
Alternate gene names: NA
Gene position: 3408408-3409214 (Clockwise)
Preceding gene: 121609997
Following gene: 121609999
Centisome position: 61.23
GC content: 68.77
Gene sequence:
>807_bases ATGATGGATTTCCTGCAAATCACGAACGATCCCGCGTTGGCGCGCCGCTGCGATCGGCTGCCGGGCATGCGCCTGTTTGT CGATCTCGAAACCCATGGCAAGGCTGAGCGGCAAGCCGGGCGCAATACCTTCATCAGCAACCATGCGCCCGAGGACGTGG GCCGTATCAAGGCGCAGCTTCGGCGCGCGCGCCTGATGGTGCGGGTCAACCCGCTGCACAGCGGCAGCGCCGCCGAGTTG GAGCGCGTGCTGGCGCAAGCTGCCGATTGGGTGATGCTGCCCATGTTCCATACGCCGGAGCAATTGCGCCGCTTCAGCGC CCTGGTGGCCGGGCGCGCGCCCATCGTGGCGCTGCTGGAAACGGCGGGCGCGTTGCAGACGCTCGATGATTGGCTGGCCA CCCCCGGTCTCTGTGAGGTGTTTGTCGGGCTCAATGATCTGCACTTGGCGCTCGGCTGCCGGTTCATGTTCGAGCCTTTG GCGCAGGGCCTGCTCGATCGGGTCGCGGCCCGGGTGCACGCGCAAGGCTTGCGCTTTGGCTTCGGCGGCATTGCGCGCCT GGATGAGGGGCTGCTGCCGGGGCGCAGCGTGCTGGCCGAGCATTTGCGGCTGGGCTCTGGCGCGGTGATCCTGTCGCGCA GCTTCCAGCACGACCAGGCGCCCGATGCCTGGGAGGAGCAGGTGCGCGCGCTGCGCCAGGCCGAGCGCGATCTGGCCGCA CGCAGCGCCGATCAGGTCGAGCGCGACCGCTGGCGCATCCGTTCGGCAATAGCCGGCCTTGCCGCAGGCATGGGGCCTGC CGCGTGA
Upstream 100 bases:
>100_bases GACATCTGATCGGTGACACGACACTAGACGCAATGCCCGGCGACCCTGGGCGCAGGGTCATGGGGGCGCCAGCCCTGCGG GCCATAATCCCTGCCGCACC
Downstream 100 bases:
>100_bases AGCGCCTGCTGGATATCGCGCTGTCTGTGGCGGCGCTGCTCCTGCTCAGCCCGGTCTGGCTCGCCGCCGCGCTGGCCAGC GCGCTGGGCGACGGTTTTCC
Product: HpcH/HpaI aldolase
Products: NA
Alternate protein names: Hpch/Hpai Aldolase; HpcH/HpaI Aldolase/Citrate Lyase Family Protein
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MMDFLQITNDPALARRCDRLPGMRLFVDLETHGKAERQAGRNTFISNHAPEDVGRIKAQLRRARLMVRVNPLHSGSAAEL ERVLAQAADWVMLPMFHTPEQLRRFSALVAGRAPIVALLETAGALQTLDDWLATPGLCEVFVGLNDLHLALGCRFMFEPL AQGLLDRVAARVHAQGLRFGFGGIARLDEGLLPGRSVLAEHLRLGSGAVILSRSFQHDQAPDAWEEQVRALRQAERDLAA RSADQVERDRWRIRSAIAGLAAGMGPAA
Sequences:
>Translated_268_residues MMDFLQITNDPALARRCDRLPGMRLFVDLETHGKAERQAGRNTFISNHAPEDVGRIKAQLRRARLMVRVNPLHSGSAAEL ERVLAQAADWVMLPMFHTPEQLRRFSALVAGRAPIVALLETAGALQTLDDWLATPGLCEVFVGLNDLHLALGCRFMFEPL AQGLLDRVAARVHAQGLRFGFGGIARLDEGLLPGRSVLAEHLRLGSGAVILSRSFQHDQAPDAWEEQVRALRQAERDLAA RSADQVERDRWRIRSAIAGLAAGMGPAA >Mature_268_residues MMDFLQITNDPALARRCDRLPGMRLFVDLETHGKAERQAGRNTFISNHAPEDVGRIKAQLRRARLMVRVNPLHSGSAAEL ERVLAQAADWVMLPMFHTPEQLRRFSALVAGRAPIVALLETAGALQTLDDWLATPGLCEVFVGLNDLHLALGCRFMFEPL AQGLLDRVAARVHAQGLRFGFGGIARLDEGLLPGRSVLAEHLRLGSGAVILSRSFQHDQAPDAWEEQVRALRQAERDLAA RSADQVERDRWRIRSAIAGLAAGMGPAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29471; Mature: 29471
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMDFLQITNDPALARRCDRLPGMRLFVDLETHGKAERQAGRNTFISNHAPEDVGRIKAQL CCCCHHCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH RRARLMVRVNPLHSGSAAELERVLAQAADWVMLPMFHTPEQLRRFSALVAGRAPIVALLE HHHHHHEEECCCCCCCHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHH TAGALQTLDDWLATPGLCEVFVGLNDLHLALGCRFMFEPLAQGLLDRVAARVHAQGLRFG HHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC FGGIARLDEGLLPGRSVLAEHLRLGSGAVILSRSFQHDQAPDAWEEQVRALRQAERDLAA CCHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH RSADQVERDRWRIRSAIAGLAAGMGPAA HHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MMDFLQITNDPALARRCDRLPGMRLFVDLETHGKAERQAGRNTFISNHAPEDVGRIKAQL CCCCHHCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH RRARLMVRVNPLHSGSAAELERVLAQAADWVMLPMFHTPEQLRRFSALVAGRAPIVALLE HHHHHHEEECCCCCCCHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHH TAGALQTLDDWLATPGLCEVFVGLNDLHLALGCRFMFEPLAQGLLDRVAARVHAQGLRFG HHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC FGGIARLDEGLLPGRSVLAEHLRLGSGAVILSRSFQHDQAPDAWEEQVRALRQAERDLAA CCHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH RSADQVERDRWRIRSAIAGLAAGMGPAA HHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA