Click here to switch to the map view.

The map label for this gene is ydcN [C]

Identifier: 121609979

GI number: 121609979

Start: 3389933

End: 3390559

Strand: Direct

Name: ydcN [C]

Synonym: Veis_3035

Alternate gene names: 121609979

Gene position: 3389933-3390559 (Clockwise)

Preceding gene: 121609973

Following gene: 121609986

Centisome position: 60.9

GC content: 62.84

Gene sequence:

>627_bases
ATGCCAGCACCTACACTCGAACCAATGGAAAACAGCAATGGAACCAGCGCCCCGGCGCTCGAAGAGTCGGTGGGCGCCGC
CATCCGGGAACTGCGGCTCAGAGAGGGACTGACGATTGCGCAAGTCTCGGAACAAGCGGGAATCAGCCGTGGGATGCTGT
CGAAAATAGAGACCGGCAGCACCATGGCGGGCCTGGACACGCTGGCGCGCATCGCGCGCACCCTGGGCGTGGCCATGTCG
GCGCTGTTTGGCAAGTACGACGCGAGCGCCGCCATGGCGCAGCATGTCAAACGAGGCGCCGGCATGGAAGTGGTGCGCAG
AGGCACCAAGAGCGGGCACAGCTACCACTTGCTCGCCTACGGCCAAGGGCCGGTGAAATGGTTCGAACCTTTCCTGATCA
CCATGGCCGACGATTCGCAGCGCTACCCGAGCTTTCAGCATCCCGGCACCGAGTTCCTGTACATGCTCGAAGGGGTCATC
GAATATCGCTGCGGACAGCAGACCTATGTGCTGGAGCCCGGGGATGCGCTGAGTTTCGACGGCCAGGCCCTGCATGGGCC
CGAGAACCTGATGCAATGCCCGATCCGCTTCCTGTCGATCATCATCTACCCGCGCAGCGCGGAATGA

Upstream 100 bases:

>100_bases
CCCTGGCTGCATGGGATGCACATGGCCCCTATGGTACACATGAATGATTCACAAGATGCAACTTATGTGCCGAGCAAGAA
TATTTCTCTGATGCCCTGCC

Downstream 100 bases:

>100_bases
GGGCTTGCCGGGCGCTCGTGCAGCGGGTTCAGGAGACGGCGCCCAGGCCGTACTGGCCGATCAGCAGGCCGCCGGTGCGA
AAGCGCTCCAGCGCATAGGG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; Cupin 2 Conserved Barrel Domain Protein; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Cro/CI Family Transcriptional Regulator; Cupin Domain Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator MerR Family; Epoxidase; Cupin 2 Barrel Domain-Containing Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Family Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator Xre Familiy; Transcriptional Regulator Protein LacI Family; Helix-Turn-Helix Protein; Transcription Regulator; XRE Family-Like Protein; Transcriptional Regulator XRE Family With Cupin Sensor

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MPAPTLEPMENSNGTSAPALEESVGAAIRELRLREGLTIAQVSEQAGISRGMLSKIETGSTMAGLDTLARIARTLGVAMS
ALFGKYDASAAMAQHVKRGAGMEVVRRGTKSGHSYHLLAYGQGPVKWFEPFLITMADDSQRYPSFQHPGTEFLYMLEGVI
EYRCGQQTYVLEPGDALSFDGQALHGPENLMQCPIRFLSIIIYPRSAE

Sequences:

>Translated_208_residues
MPAPTLEPMENSNGTSAPALEESVGAAIRELRLREGLTIAQVSEQAGISRGMLSKIETGSTMAGLDTLARIARTLGVAMS
ALFGKYDASAAMAQHVKRGAGMEVVRRGTKSGHSYHLLAYGQGPVKWFEPFLITMADDSQRYPSFQHPGTEFLYMLEGVI
EYRCGQQTYVLEPGDALSFDGQALHGPENLMQCPIRFLSIIIYPRSAE
>Mature_207_residues
PAPTLEPMENSNGTSAPALEESVGAAIRELRLREGLTIAQVSEQAGISRGMLSKIETGSTMAGLDTLARIARTLGVAMSA
LFGKYDASAAMAQHVKRGAGMEVVRRGTKSGHSYHLLAYGQGPVKWFEPFLITMADDSQRYPSFQHPGTEFLYMLEGVIE
YRCGQQTYVLEPGDALSFDGQALHGPENLMQCPIRFLSIIIYPRSAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22628; Mature: 22497

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPTLEPMENSNGTSAPALEESVGAAIRELRLREGLTIAQVSEQAGISRGMLSKIETGS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHCCCC
TMAGLDTLARIARTLGVAMSALFGKYDASAAMAQHVKRGAGMEVVRRGTKSGHSYHLLAY
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEE
GQGPVKWFEPFLITMADDSQRYPSFQHPGTEFLYMLEGVIEYRCGQQTYVLEPGDALSFD
CCCCHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
GQALHGPENLMQCPIRFLSIIIYPRSAE
CCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PAPTLEPMENSNGTSAPALEESVGAAIRELRLREGLTIAQVSEQAGISRGMLSKIETGS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHCCCC
TMAGLDTLARIARTLGVAMSALFGKYDASAAMAQHVKRGAGMEVVRRGTKSGHSYHLLAY
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEE
GQGPVKWFEPFLITMADDSQRYPSFQHPGTEFLYMLEGVIEYRCGQQTYVLEPGDALSFD
CCCCHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
GQALHGPENLMQCPIRFLSIIIYPRSAE
CCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA