Definition | Polaromonas naphthalenivorans CJ2 plasmid pPNAP06, complete sequence. |
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Accession | NC_008762 |
Length | 21,611 |
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The map label for this gene is 121583546
Identifier: 121583546
GI number: 121583546
Start: 1798
End: 2982
Strand: Reverse
Name: 121583546
Synonym: Pnap_4975
Alternate gene names: NA
Gene position: 2982-1798 (Counterclockwise)
Preceding gene: 121583547
Following gene: 121583545
Centisome position: 13.8
GC content: 55.44
Gene sequence:
>1185_bases ATGACCAAAGAAACGTTACCGTTGCCAATCGACGACCCAAAAGTTCTCGCCGATCGGCTTGACGAGCAGATTGATGCTAT CCGCAAGGTAACGGACTTCGAGATCCGCGAATACCCTATCGAAGTGCTGGTGGACAAGTTCACCAAGGGCCTTGAAACCG ATGAGGCTGAGGTCTTCATCCCAGATTACCAGCGTGAATTTATATGGACAGCCCGGCAGCAGTCGCGCTTCATCGAATCG CTGCTGATGAATCTCCCAGTGCCTTATATGTTCGTGGCCGACGTGCCCGATGGGCCCCGCGCTGGCCACCTTGAAATCAT TGATGGTTCGCAGCGCATGCGCACACTGGTCAACTTTCTACAAAACAAACTCACGCTTGAGCAGTTGCAGAAGGTGGACC TGGCCATTGGCCTGAAACTGCAAGACTTCTCGCCACCCGGGCAACTGCGCTTTAAGCGCAAGACAGTGCGCGTCATTGAG CTGACGCGCCGCGCCGACAACGAGGCACGGCGTGAAATGTTTGATCGACTTAACAGCGGTGGCACCAAGCTGGAGAGCAT GGAGACGCGCCGCGGAACTTTGGATGGGTCCTTCCTGAGGGTGATAGAGGCCTGCGCCAAGATGCCGCTGTTCAAAATAC TATGCCCTGTAAGTAAGGCCTTGGCTGATCGGGCAGAACATGTTGAACTGGTGCTGCGCTACTTCGCATACTGCGACAAC TATGCCGGCTTCACCAAGCGTGTTGATAGCTTCCTGACCGACTACCTGAAGGCCCGCAACCAAGCCGATGACCGGCAAGC TGAAGAAGCTAGCGTCCAAGAATTTGAAACCATGCTGGCTTTCGTACAAGGCCAAATGCCCAACGGCTTCAGAAAGTCGC CCACCACCAACACTGTGGCCCGTATTCGCTTTGAGTGCTTGTCGGTGGGTACCACGCTGGCCCTGCGTGAACAGCCTGCG CTGGTGCCAATCAATGTCAATGCCTGGCTTGAAAGCGAAGAGTTCATACACCACACTCGCTCTGATGCCAGCAACTCGCG ACCCAAGGTGGTCAACCGAATTCATTTTGTGCGCGACAACCTGATCGGTCGCCCTGTCCAATACGACGGGGATACTGCCA AGGTCGAGGCCAGCGCCAATTTAGACGCACCGCCTGAGGCCGAACAACTCAGCTTGCTGGTCTGA
Upstream 100 bases:
>100_bases GCAGTTGGTCGCTCAGAACGAACTGACCATCTGCGGTCGCGTTCTGGCCTGGCTGACGCTGCGGGAACACTGACGCTCTC ACCCTCCACAGGCGCCCACT
Downstream 100 bases:
>100_bases TGCCCGCCGCGCTCAGTCGCTCGCTATTGAACGCCCGCGCCACCGAGGTGCGGGCCTACTTGGCATTTTTGCAAGCAGCA CTTGAACGCGGGGCGGAACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 394; Mature: 393
Protein sequence:
>394_residues MTKETLPLPIDDPKVLADRLDEQIDAIRKVTDFEIREYPIEVLVDKFTKGLETDEAEVFIPDYQREFIWTARQQSRFIES LLMNLPVPYMFVADVPDGPRAGHLEIIDGSQRMRTLVNFLQNKLTLEQLQKVDLAIGLKLQDFSPPGQLRFKRKTVRVIE LTRRADNEARREMFDRLNSGGTKLESMETRRGTLDGSFLRVIEACAKMPLFKILCPVSKALADRAEHVELVLRYFAYCDN YAGFTKRVDSFLTDYLKARNQADDRQAEEASVQEFETMLAFVQGQMPNGFRKSPTTNTVARIRFECLSVGTTLALREQPA LVPINVNAWLESEEFIHHTRSDASNSRPKVVNRIHFVRDNLIGRPVQYDGDTAKVEASANLDAPPEAEQLSLLV
Sequences:
>Translated_394_residues MTKETLPLPIDDPKVLADRLDEQIDAIRKVTDFEIREYPIEVLVDKFTKGLETDEAEVFIPDYQREFIWTARQQSRFIES LLMNLPVPYMFVADVPDGPRAGHLEIIDGSQRMRTLVNFLQNKLTLEQLQKVDLAIGLKLQDFSPPGQLRFKRKTVRVIE LTRRADNEARREMFDRLNSGGTKLESMETRRGTLDGSFLRVIEACAKMPLFKILCPVSKALADRAEHVELVLRYFAYCDN YAGFTKRVDSFLTDYLKARNQADDRQAEEASVQEFETMLAFVQGQMPNGFRKSPTTNTVARIRFECLSVGTTLALREQPA LVPINVNAWLESEEFIHHTRSDASNSRPKVVNRIHFVRDNLIGRPVQYDGDTAKVEASANLDAPPEAEQLSLLV >Mature_393_residues TKETLPLPIDDPKVLADRLDEQIDAIRKVTDFEIREYPIEVLVDKFTKGLETDEAEVFIPDYQREFIWTARQQSRFIESL LMNLPVPYMFVADVPDGPRAGHLEIIDGSQRMRTLVNFLQNKLTLEQLQKVDLAIGLKLQDFSPPGQLRFKRKTVRVIEL TRRADNEARREMFDRLNSGGTKLESMETRRGTLDGSFLRVIEACAKMPLFKILCPVSKALADRAEHVELVLRYFAYCDNY AGFTKRVDSFLTDYLKARNQADDRQAEEASVQEFETMLAFVQGQMPNGFRKSPTTNTVARIRFECLSVGTTLALREQPAL VPINVNAWLESEEFIHHTRSDASNSRPKVVNRIHFVRDNLIGRPVQYDGDTAKVEASANLDAPPEAEQLSLLV
Specific function: Unknown
COG id: COG1479
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45010; Mature: 44879
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKETLPLPIDDPKVLADRLDEQIDAIRKVTDFEIREYPIEVLVDKFTKGLETDEAEVFI CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEC PDYQREFIWTARQQSRFIESLLMNLPVPYMFVADVPDGPRAGHLEIIDGSQRMRTLVNFL CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHHH QNKLTLEQLQKVDLAIGLKLQDFSPPGQLRFKRKTVRVIELTRRADNEARREMFDRLNSG HHHHHHHHHHHHHHHCCEEEECCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHCCC GTKLESMETRRGTLDGSFLRVIEACAKMPLFKILCPVSKALADRAEHVELVLRYFAYCDN CCCHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC YAGFTKRVDSFLTDYLKARNQADDRQAEEASVQEFETMLAFVQGQMPNGFRKSPTTNTVA CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH RIRFECLSVGTTLALREQPALVPINVNAWLESEEFIHHTRSDASNSRPKVVNRIHFVRDN HHHHHHHHHCCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH LIGRPVQYDGDTAKVEASANLDAPPEAEQLSLLV HCCCCEEECCCCEEEEECCCCCCCCCHHHHEECC >Mature Secondary Structure TKETLPLPIDDPKVLADRLDEQIDAIRKVTDFEIREYPIEVLVDKFTKGLETDEAEVFI CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEC PDYQREFIWTARQQSRFIESLLMNLPVPYMFVADVPDGPRAGHLEIIDGSQRMRTLVNFL CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHHH QNKLTLEQLQKVDLAIGLKLQDFSPPGQLRFKRKTVRVIELTRRADNEARREMFDRLNSG HHHHHHHHHHHHHHHCCEEEECCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHCCC GTKLESMETRRGTLDGSFLRVIEACAKMPLFKILCPVSKALADRAEHVELVLRYFAYCDN CCCHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC YAGFTKRVDSFLTDYLKARNQADDRQAEEASVQEFETMLAFVQGQMPNGFRKSPTTNTVA CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH RIRFECLSVGTTLALREQPALVPINVNAWLESEEFIHHTRSDASNSRPKVVNRIHFVRDN HHHHHHHHHCCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH LIGRPVQYDGDTAKVEASANLDAPPEAEQLSLLV HCCCCEEECCCCEEEEECCCCCCCCCHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA