Definition Polaromonas naphthalenivorans CJ2 plasmid pPNAP06, complete sequence.
Accession NC_008762
Length 21,611

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The map label for this gene is 121583545

Identifier: 121583545

GI number: 121583545

Start: 1046

End: 1798

Strand: Reverse

Name: 121583545

Synonym: Pnap_4974

Alternate gene names: NA

Gene position: 1798-1046 (Counterclockwise)

Preceding gene: 121583546

Following gene: NA

Centisome position: 8.32

GC content: 56.84

Gene sequence:

>753_bases
ATGCCCGCCGCGCTCAGTCGCTCGCTATTGAACGCCCGCGCCACCGAGGTGCGGGCCTACTTGGCATTTTTGCAAGCAGC
ACTTGAACGCGGGGCGGAACTTAACGCCCGGTCGCTGGCTGCTCCTTTAGAGCTAGATATTGAACTCACACACACGCTGA
AGGCCAACACCTATTTGCTGCTCTACAACGTGGTCGAAGCGACCATGACCCAGCTCATCGGCGACATCCACAGAACAGTT
AAGCAGAGTGGAGCCGTACTGGATGAACTGCATCCGCAAATGTACCTGCACATCCTTCGGCGGTTTCAAAATGTCAAGAT
CGACATCCCCGAGACGACCGCACTCGTGCCCAGCGGCACTGCCATCATTGATCACTGGCTTAACGACTACGAGACCCGAG
CCAAGGCTTACAGCAACTACCTACTTTCAGGCAATGTGGACAGCAAGCGTATCCGAGAAATCGGCCGGAATTACGGTTTC
GCCAGCTTAGAAAAGGGCCAAGATGCGCACCTCAGCCATGCCAGCTTACTGACCACCAAGACCCACCGTAATATGCTAGC
CCATGGCGAAGTCAGCTTCCGCGATTGCGGGCAATTACTGGCGTACGCCGACGTGGACAGAGATACTAACGGTCTGCTGA
ACTGCCTCGTCAGTGTGGTCGATCACGTCGACAATTACCTCAAACGCGGGTTGTACCTCCGCGCGAACGTACCGCCGCCT
GTAACGCCCGCCCCACCGCCTCCCCTAGCTTAG

Upstream 100 bases:

>100_bases
TCGGTCGCCCTGTCCAATACGACGGGGATACTGCCAAGGTCGAGGCCAGCGCCAATTTAGACGCACCGCCTGAGGCCGAA
CAACTCAGCTTGCTGGTCTG

Downstream 100 bases:

>100_bases
GCGGTACGGCGTTTCCGATAAGTCGCGCTAGCGGCTTGGCCAACACACGCATACCCGGTTTCACGAATTTGTAGCTGGTT
GGGAATGACTGAAAGATTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MPAALSRSLLNARATEVRAYLAFLQAALERGAELNARSLAAPLELDIELTHTLKANTYLLLYNVVEATMTQLIGDIHRTV
KQSGAVLDELHPQMYLHILRRFQNVKIDIPETTALVPSGTAIIDHWLNDYETRAKAYSNYLLSGNVDSKRIREIGRNYGF
ASLEKGQDAHLSHASLLTTKTHRNMLAHGEVSFRDCGQLLAYADVDRDTNGLLNCLVSVVDHVDNYLKRGLYLRANVPPP
VTPAPPPPLA

Sequences:

>Translated_250_residues
MPAALSRSLLNARATEVRAYLAFLQAALERGAELNARSLAAPLELDIELTHTLKANTYLLLYNVVEATMTQLIGDIHRTV
KQSGAVLDELHPQMYLHILRRFQNVKIDIPETTALVPSGTAIIDHWLNDYETRAKAYSNYLLSGNVDSKRIREIGRNYGF
ASLEKGQDAHLSHASLLTTKTHRNMLAHGEVSFRDCGQLLAYADVDRDTNGLLNCLVSVVDHVDNYLKRGLYLRANVPPP
VTPAPPPPLA
>Mature_249_residues
PAALSRSLLNARATEVRAYLAFLQAALERGAELNARSLAAPLELDIELTHTLKANTYLLLYNVVEATMTQLIGDIHRTVK
QSGAVLDELHPQMYLHILRRFQNVKIDIPETTALVPSGTAIIDHWLNDYETRAKAYSNYLLSGNVDSKRIREIGRNYGFA
SLEKGQDAHLSHASLLTTKTHRNMLAHGEVSFRDCGQLLAYADVDRDTNGLLNCLVSVVDHVDNYLKRGLYLRANVPPPV
TPAPPPPLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27731; Mature: 27600

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAALSRSLLNARATEVRAYLAFLQAALERGAELNARSLAAPLELDIELTHTLKANTYLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEEEEEECCCCHHH
LYNVVEATMTQLIGDIHRTVKQSGAVLDELHPQMYLHILRRFQNVKIDIPETTALVPSGT
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEECCCCEEECCCCH
AIIDHWLNDYETRAKAYSNYLLSGNVDSKRIREIGRNYGFASLEKGQDAHLSHASLLTTK
HHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
THRNMLAHGEVSFRDCGQLLAYADVDRDTNGLLNCLVSVVDHVDNYLKRGLYLRANVPPP
HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCC
VTPAPPPPLA
CCCCCCCCCC
>Mature Secondary Structure 
PAALSRSLLNARATEVRAYLAFLQAALERGAELNARSLAAPLELDIELTHTLKANTYLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEEEEEECCCCHHH
LYNVVEATMTQLIGDIHRTVKQSGAVLDELHPQMYLHILRRFQNVKIDIPETTALVPSGT
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEECCCCEEECCCCH
AIIDHWLNDYETRAKAYSNYLLSGNVDSKRIREIGRNYGFASLEKGQDAHLSHASLLTTK
HHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
THRNMLAHGEVSFRDCGQLLAYADVDRDTNGLLNCLVSVVDHVDNYLKRGLYLRANVPPP
HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCC
VTPAPPPPLA
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA