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The map label for this gene is ybeY [C]

Identifier: 120612878

GI number: 120612878

Start: 4700162

End: 4700620

Strand: Direct

Name: ybeY [C]

Synonym: Aave_4242

Alternate gene names: 120612878

Gene position: 4700162-4700620 (Clockwise)

Preceding gene: 120612877

Following gene: 120612882

Centisome position: 87.81

GC content: 69.72

Gene sequence:

>459_bases
ATGGCCCTGAACCAGCTTTCCCTGTCCCTGCAGTTCGCGCGGTTTCCCGGCGTGGAGGCGCACCGCGCCGCCCTGCCCCG
GCATGCCGTCGTCCGCTGGATCCGCCACGCGCTCTCGCTGGACGCGGAGATCACCGTGCGCATCGTCGATGCCGAAGAGG
GCCAGGCCCTGAACCGCGAGTACCGGCACAAGGACTACGCCACCAACGTGCTCACCTTCGACTACGCGCAGGAGCCCGTG
GTCATGGCCGACCTGGTGCTCTGCGCGCCCGTGGTCGAGCGCGAGGCCCGCGAGCAGAACAAGGCGCTGCACGAGCACTA
CGCCCACCTGCTGGTGCACGGCACCCTGCACGCCCAGGGCTGGGACCACGAGACCAGCGCCGAGGACGCGGACGAGATGG
AGGCCTACGAGACGGCCATCATGCAGGAGCTGGGCTTCGCCGACCCCTACGCGGACTGA

Upstream 100 bases:

>100_bases
GCGGACGTGGTGCGGCACCCGCTGGTGGCACGCATCGTCGATGCCTACGACGCCCAGCGCAGCAGCCGTTCCCCGGCGGC
ATGATGCGGCGGCGAACCCC

Downstream 100 bases:

>100_bases
GAACGGCCCACAGAGCCCTTCTGGCGTCGTTGCCGCATCTTGCCGTACCGGGCGTACTGCCTGCCGATGCGACGCCTCGC
CAGAACCGTTTCGCCGGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MALNQLSLSLQFARFPGVEAHRAALPRHAVVRWIRHALSLDAEITVRIVDAEEGQALNREYRHKDYATNVLTFDYAQEPV
VMADLVLCAPVVEREAREQNKALHEHYAHLLVHGTLHAQGWDHETSAEDADEMEAYETAIMQELGFADPYAD

Sequences:

>Translated_152_residues
MALNQLSLSLQFARFPGVEAHRAALPRHAVVRWIRHALSLDAEITVRIVDAEEGQALNREYRHKDYATNVLTFDYAQEPV
VMADLVLCAPVVEREAREQNKALHEHYAHLLVHGTLHAQGWDHETSAEDADEMEAYETAIMQELGFADPYAD
>Mature_151_residues
ALNQLSLSLQFARFPGVEAHRAALPRHAVVRWIRHALSLDAEITVRIVDAEEGQALNREYRHKDYATNVLTFDYAQEPVV
MADLVLCAPVVEREAREQNKALHEHYAHLLVHGTLHAQGWDHETSAEDADEMEAYETAIMQELGFADPYAD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=156, Percent_Identity=41.025641025641, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_ACIAC (A1TUZ4)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_972556.1
- ProteinModelPortal:   A1TUZ4
- STRING:   A1TUZ4
- GeneID:   4665569
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_4242
- NMPDR:   fig|397945.5.peg.3641
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   RWIRHAL
- PhylomeDB:   A1TUZ4
- ProtClustDB:   CLSK2391574
- BioCyc:   AAVE397945:AAVE_4242-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17230; Mature: 17099

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALNQLSLSLQFARFPGVEAHRAALPRHAVVRWIRHALSLDAEITVRIVDAEEGQALNRE
CCCCHHHHEEEHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHH
YRHKDYATNVLTFDYAQEPVVMADLVLCAPVVEREAREQNKALHEHYAHLLVHGTLHAQG
HHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
WDHETSAEDADEMEAYETAIMQELGFADPYAD
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ALNQLSLSLQFARFPGVEAHRAALPRHAVVRWIRHALSLDAEITVRIVDAEEGQALNRE
CCCHHHHEEEHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHH
YRHKDYATNVLTFDYAQEPVVMADLVLCAPVVEREAREQNKALHEHYAHLLVHGTLHAQG
HHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
WDHETSAEDADEMEAYETAIMQELGFADPYAD
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA