Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is nreC [H]
Identifier: 120612865
GI number: 120612865
Start: 4685994
End: 4686653
Strand: Reverse
Name: nreC [H]
Synonym: Aave_4229
Alternate gene names: 120612865
Gene position: 4686653-4685994 (Counterclockwise)
Preceding gene: 120612866
Following gene: 120612864
Centisome position: 87.56
GC content: 73.64
Gene sequence:
>660_bases ATGACCGCTGCTGCCATCGCTCCGCTGGAGCGCCCCGTCCGCCTGTTCCTCGTCGATGACCATGCCCTGGTGCGCGACGG CCTGCGCGCGCGCCTGGGCAGCCTCCCCTGGGTGGCGATCGTGGGCGAGGCCTCGGGCGCGGAAGAGGCCGGACCGCTGA TCGCGCGGCTGGCGCCCGGCATCGTCCTCATGGACGTGGGCATGAAGGACGTGAGCGGGCTGGACTTCGCCGCCCGCCTG CTGGCCGGCGACGGCGCCCCGCGGGTGCTCATGCTCAGCATGTACGACAACCCCGAGTACGTGCAGCGCGCCCTGCAGGT GGGCGCCAGCGGGTACGTGCTCAAGGACGCGCCGGCGTCCGAGCTGGTCGCGGCGCTGGAGGCGGTGGCCGCGGGAGGCA CCTTCCTCAGCCCGGCCGTGTCGCAGCGGCTCTTCCGCAACCAGGCCCCCAAGCCGCTGCTCACCCCGCGCGAGAGCGAG ATCCTGGCGGCGCTGGGCCGGGGCGCCTCCAGCAAGCAGATCGCCTGCGATCTCGGCCTGAGCGTGCGCACGGTGGAGGC GCACCGGCAGAACATCCGCCGGCGGCTGGAGCTGGGCAGCCTGGCGGAGCTGATCCGCTATGCCGTCGAGCACGCCAAGC GCTTCGACACGGGCCGCTGA
Upstream 100 bases:
>100_bases ACGAGCGCATGGCGGCCATCGGCGGCCGGCTGCAGGTGCGTTCGGGCGCGGGCGGCACGCGCGTGGTGGCCGAGGTGCCC GCGGATAGGATGGAGCCCGC
Downstream 100 bases:
>100_bases CGCCCGGGGCCTGTCGACAGTCCCTAGGGTTGTCCCTTACGAAATTCCACCCGGCCCGCCTACGTGGCCGGGCGGATGCG CGCGGCGCCCCTGGCCGGGA
Product: two component LuxR family transcriptional regulator
Products: NA
Alternate protein names: Nitrogen regulation protein C [H]
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MTAAAIAPLERPVRLFLVDDHALVRDGLRARLGSLPWVAIVGEASGAEEAGPLIARLAPGIVLMDVGMKDVSGLDFAARL LAGDGAPRVLMLSMYDNPEYVQRALQVGASGYVLKDAPASELVAALEAVAAGGTFLSPAVSQRLFRNQAPKPLLTPRESE ILAALGRGASSKQIACDLGLSVRTVEAHRQNIRRRLELGSLAELIRYAVEHAKRFDTGR
Sequences:
>Translated_219_residues MTAAAIAPLERPVRLFLVDDHALVRDGLRARLGSLPWVAIVGEASGAEEAGPLIARLAPGIVLMDVGMKDVSGLDFAARL LAGDGAPRVLMLSMYDNPEYVQRALQVGASGYVLKDAPASELVAALEAVAAGGTFLSPAVSQRLFRNQAPKPLLTPRESE ILAALGRGASSKQIACDLGLSVRTVEAHRQNIRRRLELGSLAELIRYAVEHAKRFDTGR >Mature_218_residues TAAAIAPLERPVRLFLVDDHALVRDGLRARLGSLPWVAIVGEASGAEEAGPLIARLAPGIVLMDVGMKDVSGLDFAARLL AGDGAPRVLMLSMYDNPEYVQRALQVGASGYVLKDAPASELVAALEAVAAGGTFLSPAVSQRLFRNQAPKPLLTPRESEI LAALGRGASSKQIACDLGLSVRTVEAHRQNIRRRLELGSLAELIRYAVEHAKRFDTGR
Specific function: Member of the two-component regulatory system nreB/nreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. Phosphorylated nreC binds to a GC-rich palindromic sequence at the promoters of the nitrate (narGHJI) and nit
COG id: COG2197
COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790102, Length=195, Percent_Identity=35.3846153846154, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1788222, Length=206, Percent_Identity=28.6407766990291, Blast_Score=102, Evalue=1e-23, Organism=Escherichia coli, GI1788521, Length=199, Percent_Identity=34.6733668341709, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1786747, Length=203, Percent_Identity=29.5566502463054, Blast_Score=91, Evalue=4e-20, Organism=Escherichia coli, GI1787473, Length=187, Percent_Identity=33.6898395721925, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1788546, Length=201, Percent_Identity=25.3731343283582, Blast_Score=70, Evalue=8e-14, Organism=Escherichia coli, GI1788712, Length=195, Percent_Identity=23.5897435897436, Blast_Score=61, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR016032 - InterPro: IPR001789 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]
EC number: NA
Molecular weight: Translated: 23312; Mature: 23181
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAAAIAPLERPVRLFLVDDHALVRDGLRARLGSLPWVAIVGEASGAEEAGPLIARLAPG CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCC IVLMDVGMKDVSGLDFAARLLAGDGAPRVLMLSMYDNPEYVQRALQVGASGYVLKDAPAS EEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCEEECCCCHH ELVAALEAVAAGGTFLSPAVSQRLFRNQAPKPLLTPRESEILAALGRGASSKQIACDLGL HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCC SVRTVEAHRQNIRRRLELGSLAELIRYAVEHAKRFDTGR EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TAAAIAPLERPVRLFLVDDHALVRDGLRARLGSLPWVAIVGEASGAEEAGPLIARLAPG CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCC IVLMDVGMKDVSGLDFAARLLAGDGAPRVLMLSMYDNPEYVQRALQVGASGYVLKDAPAS EEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCEEECCCCHH ELVAALEAVAAGGTFLSPAVSQRLFRNQAPKPLLTPRESEILAALGRGASSKQIACDLGL HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCC SVRTVEAHRQNIRRRLELGSLAELIRYAVEHAKRFDTGR EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12426351 [H]