Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120612828
Identifier: 120612828
GI number: 120612828
Start: 4644033
End: 4645028
Strand: Direct
Name: 120612828
Synonym: Aave_4192
Alternate gene names: NA
Gene position: 4644033-4645028 (Clockwise)
Preceding gene: 120612827
Following gene: 120612829
Centisome position: 86.76
GC content: 68.07
Gene sequence:
>996_bases ATGAGCACGAGAGAGAGAGAGACACCCATGTTGCGCCGCAGTTACCTTTTGGCCGTCCTGCTGGCGGGAGGGGCCTGGAG CGTCCAGGCCCAGAACGCCTCGGCGCCGCTGACCATCGTCGTTCCGTACCCCGCGGGCGGGCCCGTGGACGCGTCCGCCC GCATCGTGGCGGAGGGCGTGCGCGGCACACTCGGCCCCGTGGAGGTGCAGAACAAGCCGGGCGCCGGCGGCACGACGGGC GCGGCGCTGGTGGCCAAGGCTCCGAAGGACGCCAACTGGCTGGTGATGGGCGCGGTCGCCACGCATGCGGTGAATCCGTG GCTGCAGGCAGGCTTCCCGTACGACCCGCTGAAGGATTTCAAGCCGATCGCGCTCGTGGCGCGCACGCCCAACGTGCTCG TCATGGAAGCGGAGCGTGCCAAGTCGCTGGGCATCCGCACGACCGGGGAGCTGGTGCAGTACCTCAAGAAGAACCCCGAC CAGTTGCGCTACGGATCGGGCGGCAACGGCAGCATCGGCCACATCGCGGCCGAGATGTTCAAGTCGCTCACCAATACGCG CGTGGCGCACGTGCCCTTCCAGGGATCCGCGCCCGCGCTCAAAGCCCTGCAGTCGGGAGAGGTCGCGTTCTTGTTCGACA ACCTCGCCTCGTCGCTGCCGCTGGTCAAGGCCGGCAAGCTCAAGGCCCTCGGCGTGACCAGCCTGGGCCGGGACGACGAG CTGCCGGACGTGCGCAGCATCAACGACGAGGTGCCGGGATTCAACGTGGTGACGTGGTTCGGGCTGTTCGCCCCGGCCTC GCTGCCCGATGAGGATGCCCGCCGCTATGCGGCGGCCATCACCGCGGCGATGAAGGAGCCCGACAGTGCGCAGAAGCTCA AGGAGATGGGCATCGACGCCGAGGACCTGACGCTGGAAACCTTCGGCCAGTTCGTGCGCGCGGAGCACGCGAAGTACGGC TTCCTGATCAAGGCCGCGAAGATCAAGATGGACTGA
Upstream 100 bases:
>100_bases TGCTGCAGGGCGCCTGAAAGAACGCCTAAAGCCATTGGCAGGCCGATTGACGTAACCAACTGCATCGGCATGGCCCCCGT CTCTATACTGCGCCGTCCCA
Downstream 100 bases:
>100_bases CAGCGCGGGGCGCCCTGGCATGGGCATTCCCGCGCATTGCATAACCAGGAGACATGCCATGGGACAAGCCCCCGTCGTTT ACGGCCAATCCGACCGCCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MSTRERETPMLRRSYLLAVLLAGGAWSVQAQNASAPLTIVVPYPAGGPVDASARIVAEGVRGTLGPVEVQNKPGAGGTTG AALVAKAPKDANWLVMGAVATHAVNPWLQAGFPYDPLKDFKPIALVARTPNVLVMEAERAKSLGIRTTGELVQYLKKNPD QLRYGSGGNGSIGHIAAEMFKSLTNTRVAHVPFQGSAPALKALQSGEVAFLFDNLASSLPLVKAGKLKALGVTSLGRDDE LPDVRSINDEVPGFNVVTWFGLFAPASLPDEDARRYAAAITAAMKEPDSAQKLKEMGIDAEDLTLETFGQFVRAEHAKYG FLIKAAKIKMD
Sequences:
>Translated_331_residues MSTRERETPMLRRSYLLAVLLAGGAWSVQAQNASAPLTIVVPYPAGGPVDASARIVAEGVRGTLGPVEVQNKPGAGGTTG AALVAKAPKDANWLVMGAVATHAVNPWLQAGFPYDPLKDFKPIALVARTPNVLVMEAERAKSLGIRTTGELVQYLKKNPD QLRYGSGGNGSIGHIAAEMFKSLTNTRVAHVPFQGSAPALKALQSGEVAFLFDNLASSLPLVKAGKLKALGVTSLGRDDE LPDVRSINDEVPGFNVVTWFGLFAPASLPDEDARRYAAAITAAMKEPDSAQKLKEMGIDAEDLTLETFGQFVRAEHAKYG FLIKAAKIKMD >Mature_330_residues STRERETPMLRRSYLLAVLLAGGAWSVQAQNASAPLTIVVPYPAGGPVDASARIVAEGVRGTLGPVEVQNKPGAGGTTGA ALVAKAPKDANWLVMGAVATHAVNPWLQAGFPYDPLKDFKPIALVARTPNVLVMEAERAKSLGIRTTGELVQYLKKNPDQ LRYGSGGNGSIGHIAAEMFKSLTNTRVAHVPFQGSAPALKALQSGEVAFLFDNLASSLPLVKAGKLKALGVTSLGRDDEL PDVRSINDEVPGFNVVTWFGLFAPASLPDEDARRYAAAITAAMKEPDSAQKLKEMGIDAEDLTLETFGQFVRAEHAKYGF LIKAAKIKMD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 35133; Mature: 35002
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTRERETPMLRRSYLLAVLLAGGAWSVQAQNASAPLTIVVPYPAGGPVDASARIVAEGV CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHCC RGTLGPVEVQNKPGAGGTTGAALVAKAPKDANWLVMGAVATHAVNPWLQAGFPYDPLKDF CCCCCCEEECCCCCCCCCCCCEEEEECCCCCCEEEEEHHHHHHCCHHHHCCCCCCCCCCC KPIALVARTPNVLVMEAERAKSLGIRTTGELVQYLKKNPDQLRYGSGGNGSIGHIAAEMF CCEEEEEECCCEEEEECHHHHHCCCCCHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHH KSLTNTRVAHVPFQGSAPALKALQSGEVAFLFDNLASSLPLVKAGKLKALGVTSLGRDDE HHHHCCEEEEECCCCCCHHHHHHCCCCEEEEEHHHHHCCCCEECCCEEEEEECCCCCCCC LPDVRSINDEVPGFNVVTWFGLFAPASLPDEDARRYAAAITAAMKEPDSAQKLKEMGIDA CCCHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH EDLTLETFGQFVRAEHAKYGFLIKAAKIKMD HHCCHHHHHHHHHHHCCCCCEEEEEEEEECC >Mature Secondary Structure STRERETPMLRRSYLLAVLLAGGAWSVQAQNASAPLTIVVPYPAGGPVDASARIVAEGV CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHCC RGTLGPVEVQNKPGAGGTTGAALVAKAPKDANWLVMGAVATHAVNPWLQAGFPYDPLKDF CCCCCCEEECCCCCCCCCCCCEEEEECCCCCCEEEEEHHHHHHCCHHHHCCCCCCCCCCC KPIALVARTPNVLVMEAERAKSLGIRTTGELVQYLKKNPDQLRYGSGGNGSIGHIAAEMF CCEEEEEECCCEEEEECHHHHHCCCCCHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHH KSLTNTRVAHVPFQGSAPALKALQSGEVAFLFDNLASSLPLVKAGKLKALGVTSLGRDDE HHHHCCEEEEECCCCCCHHHHHHCCCCEEEEEHHHHHCCCCEECCCEEEEEECCCCCCCC LPDVRSINDEVPGFNVVTWFGLFAPASLPDEDARRYAAAITAAMKEPDSAQKLKEMGIDA CCCHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH EDLTLETFGQFVRAEHAKYGFLIKAAKIKMD HHCCHHHHHHHHHHHCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]