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The map label for this gene is soxR [H]

Identifier: 120612820

GI number: 120612820

Start: 4635292

End: 4636230

Strand: Direct

Name: soxR [H]

Synonym: Aave_4183

Alternate gene names: 120612820

Gene position: 4635292-4636230 (Clockwise)

Preceding gene: 120612816

Following gene: 120612825

Centisome position: 86.6

GC content: 70.29

Gene sequence:

>939_bases
ATGAATCTCCGGCAACTAGAAGTCTTCCAGGCCGTCATGCAGACCGGCAACATGAGCGCCGCCGCCCGACTCGTCAGCAT
CACCCCGTCCGCCGTCAGCAAGACCATCGCCCATGCCGAACTGCAGCTCGGCTATCCGCTGTTCAACCGCGTCCGCGGGG
CCCTGGTGCCCACGCCCGAGGCGCAGGCGCTGTTCGCGGCATCGGCCCAGATCCACCGCCAGCTCGAAGAGCTGCGCCGT
ACCGCCGTCAACCTGCGCCAGCCCGAGGGCGGGCAGGTGCGCCTGGGCGCGATTCCCTCGGTCACGCACACCTTCCTGCC
CACCGTGCTGGAACTGCATGCACGCGAATCCCCTCGCGTGAAGGTGGAAGTGCGCACGCTGCACCCCGACCAGATGGCCC
AGGCGCTGCTGACACGGACGGTGGATTTCGCCCTGGGCTTCTATCCCCATCCGCATCCGCAGGTATGCAGCGCCATCCTG
GTCAGCGGGCCGCTATCGATCGCGGTGGGCCGCGACATCTGGCAGCGGGCCGTGCGCCTGAGCCGCAACGACCCGATCTC
GTTCCTGTCCAACACGCCGATGATCCAGTTGCTGGGCGACGATCCCATGCGCGGGCCCATGGCCGGACTGGCCCGGGACC
TGGGGGGGCATACCGAGCTGGGCATCCAGGTGCAGACCTCGCAACTGGCAGTGGAGCTGGTGCGGCGCGGCCTCGGCTGG
ACGGTGGTGGATTTCCTCACGGCCGGCAACCTGGACCCGGCCACGGTAGTGGCGGTACCGCTGCGCCACCTCCCGCCCAT
TCCCCTGCATGCCTACCATGCCGAGCACCGCCCGCCGGACCGGCACGCGGCCCGGATGCTGGCACGGCTGCCGGGGCTGC
TGCACGCGGTGCTGGGGCGCGCGCCCTCGGCGGAGCAGCCGGTGCCATCCGGCGGCTGA

Upstream 100 bases:

>100_bases
CGGGTGCAGTATGGTAGGAAGGCCACAACACGGCAGTGGGGAATAATCCAGGGCCGGGTGTGAATGGAATTCACACCCCC
TCCGATCCGCCTCCCATGCC

Downstream 100 bases:

>100_bases
TCCGGGGCGACGCCGGGCGCCGGCCGGCGGCCGTGGCCCCATGCCGTGGTATCAGCGTCCGCGGGAGCGCAGCGCGAACG
CCGCGGCCACCACCAGCCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MNLRQLEVFQAVMQTGNMSAAARLVSITPSAVSKTIAHAELQLGYPLFNRVRGALVPTPEAQALFAASAQIHRQLEELRR
TAVNLRQPEGGQVRLGAIPSVTHTFLPTVLELHARESPRVKVEVRTLHPDQMAQALLTRTVDFALGFYPHPHPQVCSAIL
VSGPLSIAVGRDIWQRAVRLSRNDPISFLSNTPMIQLLGDDPMRGPMAGLARDLGGHTELGIQVQTSQLAVELVRRGLGW
TVVDFLTAGNLDPATVVAVPLRHLPPIPLHAYHAEHRPPDRHAARMLARLPGLLHAVLGRAPSAEQPVPSGG

Sequences:

>Translated_312_residues
MNLRQLEVFQAVMQTGNMSAAARLVSITPSAVSKTIAHAELQLGYPLFNRVRGALVPTPEAQALFAASAQIHRQLEELRR
TAVNLRQPEGGQVRLGAIPSVTHTFLPTVLELHARESPRVKVEVRTLHPDQMAQALLTRTVDFALGFYPHPHPQVCSAIL
VSGPLSIAVGRDIWQRAVRLSRNDPISFLSNTPMIQLLGDDPMRGPMAGLARDLGGHTELGIQVQTSQLAVELVRRGLGW
TVVDFLTAGNLDPATVVAVPLRHLPPIPLHAYHAEHRPPDRHAARMLARLPGLLHAVLGRAPSAEQPVPSGG
>Mature_312_residues
MNLRQLEVFQAVMQTGNMSAAARLVSITPSAVSKTIAHAELQLGYPLFNRVRGALVPTPEAQALFAASAQIHRQLEELRR
TAVNLRQPEGGQVRLGAIPSVTHTFLPTVLELHARESPRVKVEVRTLHPDQMAQALLTRTVDFALGFYPHPHPQVCSAIL
VSGPLSIAVGRDIWQRAVRLSRNDPISFLSNTPMIQLLGDDPMRGPMAGLARDLGGHTELGIQVQTSQLAVELVRRGLGW
TVVDFLTAGNLDPATVVAVPLRHLPPIPLHAYHAEHRPPDRHAARMLARLPGLLHAVLGRAPSAEQPVPSGG

Specific function: Transcriptional repressor of soxA gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=124, Percent_Identity=32.258064516129, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788481, Length=151, Percent_Identity=29.1390728476821, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=158, Percent_Identity=26.5822784810127, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33844; Mature: 33844

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRQLEVFQAVMQTGNMSAAARLVSITPSAVSKTIAHAELQLGYPLFNRVRGALVPTPE
CCCHHHHHHHHHHHCCCHHHHHHHEECCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCC
AQALFAASAQIHRQLEELRRTAVNLRQPEGGQVRLGAIPSVTHTFLPTVLELHARESPRV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCE
KVEVRTLHPDQMAQALLTRTVDFALGFYPHPHPQVCSAILVSGPLSIAVGRDIWQRAVRL
EEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHC
SRNDPISFLSNTPMIQLLGDDPMRGPMAGLARDLGGHTELGIQVQTSQLAVELVRRGLGW
CCCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCH
TVVDFLTAGNLDPATVVAVPLRHLPPIPLHAYHAEHRPPDRHAARMLARLPGLLHAVLGR
HHHHHHHCCCCCCHHHEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
APSAEQPVPSGG
CCCCCCCCCCCC
>Mature Secondary Structure
MNLRQLEVFQAVMQTGNMSAAARLVSITPSAVSKTIAHAELQLGYPLFNRVRGALVPTPE
CCCHHHHHHHHHHHCCCHHHHHHHEECCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCC
AQALFAASAQIHRQLEELRRTAVNLRQPEGGQVRLGAIPSVTHTFLPTVLELHARESPRV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCE
KVEVRTLHPDQMAQALLTRTVDFALGFYPHPHPQVCSAILVSGPLSIAVGRDIWQRAVRL
EEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHC
SRNDPISFLSNTPMIQLLGDDPMRGPMAGLARDLGGHTELGIQVQTSQLAVELVRRGLGW
CCCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCH
TVVDFLTAGNLDPATVVAVPLRHLPPIPLHAYHAEHRPPDRHAARMLARLPGLLHAVLGR
HHHHHHHCCCCCCHHHEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
APSAEQPVPSGG
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA