Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is paiB [H]
Identifier: 120612808
GI number: 120612808
Start: 4623436
End: 4624077
Strand: Direct
Name: paiB [H]
Synonym: Aave_4171
Alternate gene names: 120612808
Gene position: 4623436-4624077 (Clockwise)
Preceding gene: 120612807
Following gene: 120612816
Centisome position: 86.37
GC content: 69.31
Gene sequence:
>642_bases ATGTACCTGCCCGCCGCCTTCGCCGAACCCCGGACGTCCGAACAGCACCGCCTCATCGAAAGCCATCCGCTGGGGATGCT GGTCACCCAGGGGGCGCGGGGCCTGGATGCCAACCACCTTCCGTTCCTGCTGGATGCCGGCAAAGGGCCGCTCGGCACGC TGGCGGGCCACGTGGCCCGCGCCAATCCGGTATGGACGGAGGTGGCGGACGGGAGCGAGGTGCTGGTGGTGTTCCGCGGC GCCGAGGGGTACATCTCGCCCCAGTGGTATCCCGGCAAGGCCGAGCACCACCGGCACGTGCCCACATGGAACTACGAAGC CGTCCACGTCCATGGCCGCATGACCGTGCGCGACGATGGCGCATTCGTGCGCGGGGTGGTCGCGCGGCTGACGCGCAGGC ATGAAGCCGCCATGGAGCGGCCCTGGAAAATGGGTGATGCGCCCGCGGACTACCTGGATGCGATGGTGCAGCAGATCGTG GGCATCGAGATCGCCATCACCCGGATGGAAGGCAAGCGCAAGCTCAGCCAGAACCGCGACGACCGCGATTTCGCCGGTGC GGTGCAGGCGCTGCGCGAACGCGGGCAGGAGGCGCTGGCGGATGCCATGCGGCAGGCATCGCCCGTGCGCGGTCCGTTCT GA
Upstream 100 bases:
>100_bases ATAGGCCCAAGTGACCGGTTCCATAGTGCCCCCGATTGGGGGCACATTCACGGGCAGGCCGGCGGGTGCCGGCAGCCGCC CACCAGCCCCTCCTCCGACC
Downstream 100 bases:
>100_bases GAGGAATCAGCCCTGGCGCCAGGGCAGGCCGCGCAGGCGCCAGCCGCCCGTGCGGTTGCGGTGCCCGTCGGCATCCGCAT CGCCTTCGAAGCCTTCGAGG
Product: negative transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MYLPAAFAEPRTSEQHRLIESHPLGMLVTQGARGLDANHLPFLLDAGKGPLGTLAGHVARANPVWTEVADGSEVLVVFRG AEGYISPQWYPGKAEHHRHVPTWNYEAVHVHGRMTVRDDGAFVRGVVARLTRRHEAAMERPWKMGDAPADYLDAMVQQIV GIEIAITRMEGKRKLSQNRDDRDFAGAVQALRERGQEALADAMRQASPVRGPF
Sequences:
>Translated_213_residues MYLPAAFAEPRTSEQHRLIESHPLGMLVTQGARGLDANHLPFLLDAGKGPLGTLAGHVARANPVWTEVADGSEVLVVFRG AEGYISPQWYPGKAEHHRHVPTWNYEAVHVHGRMTVRDDGAFVRGVVARLTRRHEAAMERPWKMGDAPADYLDAMVQQIV GIEIAITRMEGKRKLSQNRDDRDFAGAVQALRERGQEALADAMRQASPVRGPF >Mature_213_residues MYLPAAFAEPRTSEQHRLIESHPLGMLVTQGARGLDANHLPFLLDAGKGPLGTLAGHVARANPVWTEVADGSEVLVVFRG AEGYISPQWYPGKAEHHRHVPTWNYEAVHVHGRMTVRDDGAFVRGVVARLTRRHEAAMERPWKMGDAPADYLDAMVQQIV GIEIAITRMEGKRKLSQNRDDRDFAGAVQALRERGQEALADAMRQASPVRGPF
Specific function: Involved in the reduction of extracellular and cell- associated protease levels, as well as in the reduced levels of alpha-amylase, levansucrase, alkaline phosphatase and sporulation inhibition, when present in high copy number [H]
COG id: COG2808
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the paiB family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322780, Length=154, Percent_Identity=31.1688311688312, Blast_Score=82, Evalue=7e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007396 - InterPro: IPR012349 - InterPro: IPR009002 [H]
Pfam domain/function: PF04299 FMN_bind_2 [H]
EC number: NA
Molecular weight: Translated: 23601; Mature: 23601
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYLPAAFAEPRTSEQHRLIESHPLGMLVTQGARGLDANHLPFLLDAGKGPLGTLAGHVAR CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHC ANPVWTEVADGSEVLVVFRGAEGYISPQWYPGKAEHHRHVPTWNYEAVHVHGRMTVRDDG CCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEECCC AFVRGVVARLTRRHEAAMERPWKMGDAPADYLDAMVQQIVGIEIAITRMEGKRKLSQNRD HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCEEEEEECHHHHHHHCCCC DRDFAGAVQALRERGQEALADAMRQASPVRGPF CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MYLPAAFAEPRTSEQHRLIESHPLGMLVTQGARGLDANHLPFLLDAGKGPLGTLAGHVAR CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHC ANPVWTEVADGSEVLVVFRGAEGYISPQWYPGKAEHHRHVPTWNYEAVHVHGRMTVRDDG CCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEECCC AFVRGVVARLTRRHEAAMERPWKMGDAPADYLDAMVQQIVGIEIAITRMEGKRKLSQNRD HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCEEEEEECHHHHHHHCCCC DRDFAGAVQALRERGQEALADAMRQASPVRGPF CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2108124; 9384377 [H]