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The map label for this gene is ygaU [H]

Identifier: 120612807

GI number: 120612807

Start: 4622786

End: 4623277

Strand: Direct

Name: ygaU [H]

Synonym: Aave_4170

Alternate gene names: 120612807

Gene position: 4622786-4623277 (Clockwise)

Preceding gene: 120612805

Following gene: 120612808

Centisome position: 86.36

GC content: 66.06

Gene sequence:

>492_bases
ATGGGACTTTTCAGCTTCGTCAAGGAAGCCGGGGAAAAGCTGTTCGGGGGCAAGGAGGCGCATGCCGCGCCGGCCGCTGC
GCCCGCCGCACCGAGCCAGGACGAACTCAACGCCACCGCCGGCAAGGCGATCGAGACGTACATCGCCTCCCAGAACCTGG
GCGTGCGCGATGTGCGGGTGACGTTCGCGGGCCCGGAGGGCAAGGTGACCGTGCAAGGCGAGGCGCCGACCCAGGCCGCC
AAGGAAAAGGTCACGCTGTGCTGCGGCAATGTGTCCGGCGTGACGAGCGTGGACAACCAGATGGCCGTGCAGGCGCCCGA
GGCGGAAGCGCAATACCACGACGTGGTGCGCGGCGACACGCTGTCGGCGATTGCCAAGAAGTACTACGGCGATGCCAACA
AGTACCCGCGCATCTTCGAGGCCAACCAGCCCATGCTGACGCATCCGGACAAGATCTATCCGGGCCAGAAGCTGCGCATT
CCGCCGCTGTAA

Upstream 100 bases:

>100_bases
CGGGCCGATGTCCGACAGGTCGGGCGCGCCCCCAGGCGCTAAAGTGTTCCGGGCCGGCAGCCCGCCGGCCGTTCTTTCAC
CCATAAAAAGGAGCAATGCC

Downstream 100 bases:

>100_bases
CGCGCATTCCGGCCGGAACACGCAGCGGTGATGGCCACTTCCCGAGGGTCTGCGTGAAATAGGCCCAAGTGACCGGTTCC
ATAGTGCCCCCGATTGGGGG

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MGLFSFVKEAGEKLFGGKEAHAAPAAAPAAPSQDELNATAGKAIETYIASQNLGVRDVRVTFAGPEGKVTVQGEAPTQAA
KEKVTLCCGNVSGVTSVDNQMAVQAPEAEAQYHDVVRGDTLSAIAKKYYGDANKYPRIFEANQPMLTHPDKIYPGQKLRI
PPL

Sequences:

>Translated_163_residues
MGLFSFVKEAGEKLFGGKEAHAAPAAAPAAPSQDELNATAGKAIETYIASQNLGVRDVRVTFAGPEGKVTVQGEAPTQAA
KEKVTLCCGNVSGVTSVDNQMAVQAPEAEAQYHDVVRGDTLSAIAKKYYGDANKYPRIFEANQPMLTHPDKIYPGQKLRI
PPL
>Mature_162_residues
GLFSFVKEAGEKLFGGKEAHAAPAAAPAAPSQDELNATAGKAIETYIASQNLGVRDVRVTFAGPEGKVTVQGEAPTQAAK
EKVTLCCGNVSGVTSVDNQMAVQAPEAEAQYHDVVRGDTLSAIAKKYYGDANKYPRIFEANQPMLTHPDKIYPGQKLRIP
PL

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=162, Percent_Identity=45.679012345679, Blast_Score=135, Evalue=2e-33,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 17287; Mature: 17155

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFSFVKEAGEKLFGGKEAHAAPAAAPAAPSQDELNATAGKAIETYIASQNLGVRDVRV
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCEEEEE
TFAGPEGKVTVQGEAPTQAAKEKVTLCCGNVSGVTSVDNQMAVQAPEAEAQYHDVVRGDT
EEECCCCCEEEECCCCHHHHHHEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHCCCH
LSAIAKKYYGDANKYPRIFEANQPMLTHPDKIYPGQKLRIPPL
HHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCC
>Mature Secondary Structure 
GLFSFVKEAGEKLFGGKEAHAAPAAAPAAPSQDELNATAGKAIETYIASQNLGVRDVRV
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCEEEEE
TFAGPEGKVTVQGEAPTQAAKEKVTLCCGNVSGVTSVDNQMAVQAPEAEAQYHDVVRGDT
EEECCCCCEEEECCCCHHHHHHEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHCCCH
LSAIAKKYYGDANKYPRIFEANQPMLTHPDKIYPGQKLRIPPL
HHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]