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The map label for this gene is xpsD [H]

Identifier: 120612787

GI number: 120612787

Start: 4603617

End: 4606106

Strand: Reverse

Name: xpsD [H]

Synonym: Aave_4150

Alternate gene names: 120612787

Gene position: 4606106-4603617 (Counterclockwise)

Preceding gene: 120612788

Following gene: 120612786

Centisome position: 86.05

GC content: 65.46

Gene sequence:

>2490_bases
ATGATTTTTTATCGATACGCTCTGACCTCCATCGCTATGGCCGTCTGCCAGTTGGCTGCGGCACAGACCGCCGCGCCCGG
TGGTGCCCCCTCCACCAACGTCGTTACCGAATCGGGAAGTGCTCCAGCGGCCGTCGGATCGGGGGCTGCCACCGACGGCA
CGGCAGCAGGCAAGGCCGGTGGCGGCGCCGCAGCAGGCGACGACCAGGGCGGTCAGCCCCGTATCCTGCGCGGCACCGAC
AAGGTGCTGGCCGATCCCAAGCCCGTCCCGGCCTTGACCGGTGCGCCCATGACCTTCAGCTTCGAGGAGGCTCCTGTGGC
GGAGGTCGTCCGCACGGTGCTGGGAGATATCGCCAAGGCGAATTACGTGCTGCATCCCCCGCTGAACGGCACGGTCACGC
TGGCCACCCGCAATCCCATTCCTCCGGACCAGGCCATGTTCCTGCTGGAGAGCGCGCTGCAGGCCAATGGCCTGGGGATG
ATCCGGGATGCACGGGGCACCTACCATGTCGGTCGCCCGGACGCCCTGCGCGCCATCGGCGGCACGCTGCGCCAGTTCCG
CAGCGGCGAGCCCCTGCCTCCCGGCAACGGGGCCGTCATCATTCCGCTGCAGTACATCGGCGCGGCCGAGATGGCCTCCA
TCCTGCGGCCCATGGTGACGCCCGATGCGATCGTCCGCGTGGACAACCTGCGCAACGTTCTGGTGATGTCGGGAACGCGC
ACCCAGGCGGAAGCCTGGATGGATCTGGTCAACACCTTCGACGTGGATCTGCTCAAGGGCATGTCCGTAGGCGTGTTCCC
GCTCAAGTACGCCTCCGTGAAGGAGGTCGAGGCTGCGCTGCGCGTGGTGAGCGGTGGCGGCGGCAGCGCGCCCGGGGCCG
TTCCGGGCACGCCGGCGGGTGCTGCCGCGGCAGCGGCTGCGGGTGCGAACCAGGCCAATGCCGCTCCCGTGACGCTCGGA
GAGGGCAATCCGCTGTTCGGCGCGCTGCGCATCATGCCGATCGAGCGCATCAACAGCATCCTCGTGGTCACGCCCCGCGC
CGCCTATCTGGACGAGGCTCGCCGCTGGATCGAAAAGCTCGACCAGCCCAGCGACAACGGCGCGGAGCCGCAACTGTTCA
TCTACCACGTGCAGAACGGCAACGCGAAACACTTGGCCGGCGTGCTGAGCGGCATCTTCGGCGGCCAAGCCGGAGGCAGT
GTCGCGAACAGCGGGGTGGCGCCCGGCCTCGGTGGGACGTCGTCCAACTCGTACGGCTCCTCTGGCTTCGGCAACTCGTC
CTTCAACAACGGCTTCGGCTCGTCAGGGTTCGGCAACTCGCCATTTGGTGGCGGCTTCGGCAGCAGCGGAGGTTTCGGCA
GCAGCGGTGGCTTCGGCAGCAGCGGAGGTTTCGGTGGGGGCTTCAGCAGCGGCAGCGGCTTCGGTTCGTTCCAGGGTAAC
CGCGGCAACCAGAACCAGGCGGGCACTCAGCAGGGAGCGGTCAGCGCCAACCTCGGTGGGGTCCGGCTGATGGCCGATGA
GCTCAACAATTCGGTGCTGGTCTGGGGGACGAAGGCCAACTACATGAAGATCGAGGCCACCCTGAAGCGGCTCGACCTGC
CCCCGACGCAGGTGCTGATCGAGGCATCGATCGTGGAAGTCACCCTGGACGACACGCTCCAATACGGCTTGCAATGGGCA
TTCAACAATGCTGGGCCCTCGAATCTCAACGGGGCGGGCCAGTTGCTGACCAACGGTCCCAGCGATAAAACGCCTATCGG
CAGTTCCATACCGACGCCGACGAGCTCCGGCTTCTCGTACGCTCTGTCCAATTCTCTGGGCAGTGTCCGTGTCGTGCTCA
ATGCCCTGGCCACCAAGCGGCTGCTCAAGGTGATCTCGAGCCCCTCCCTGATGGTGCTGGACAACCACACGGCCATGATG
AGCGTGGGTAACCAGCAGCCGGTAAAGACGGGCTCGTTGATCACCTCCGTCAGTGGTGGAAACTCCGTAGCCGACACGAT
CCAGTACCGCGATACAGGGGTGAGTCTGGCCGTCACGCCTTCCGTGAACGCTGGCAACCTGGTGACCATGCAGATCGACC
AGGCCGTGACGGATGCCGTGGCGGACAATTCGGGAAGCATTTCCCTGCAACCTGTGTTCCAGCAGCGCCAGATCACCAGC
AAGGTGGCCGTGCGCTCGGGTGAAGCCATCGTGCTCGGCGGCCTGATTCGCGATACCAGCAATTCGTCCAAATCCGGTGT
CCCGCTGCTGCAGGACATTCCCCTGGTTGGCAGCCTCTTCAGCAACAACGGCAAGACGGGCAATCGCACGGAACTGCTGG
TGGTGATCACGCCCAAAGTGGTGCGGACCGACATCGACATCCGCGAGGTCAGCGATGAACTGCGCGACCGCCTGAAGGGG
TTGCAGATCATCGAGCTGAAGGAGAACGGACGCACCCCTGCTGCGCCGTCGGGTACGTCGACAACGATCCAGCCATTGCC
TCCGCAGTGA

Upstream 100 bases:

>100_bases
CGGGCGCGGCCAACTCGCCGCGCCGCGCGGTCTTCGGCGGAAGCCGGGCCCGTTGAATTCCAGCGCAGGTGCGCTTTCCC
ATCTTCCGGGTACGTAAGTC

Downstream 100 bases:

>100_bases
TGGATTCACTTATCATTTTTCCCTATGAACTTTAAAACTCTCATTCTCAAGTCGGGTTCGGCAAGCTTGGTCGCGGGTGC
GATGCTCTTGGCAGGGTGCG

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 829; Mature: 829

Protein sequence:

>829_residues
MIFYRYALTSIAMAVCQLAAAQTAAPGGAPSTNVVTESGSAPAAVGSGAATDGTAAGKAGGGAAAGDDQGGQPRILRGTD
KVLADPKPVPALTGAPMTFSFEEAPVAEVVRTVLGDIAKANYVLHPPLNGTVTLATRNPIPPDQAMFLLESALQANGLGM
IRDARGTYHVGRPDALRAIGGTLRQFRSGEPLPPGNGAVIIPLQYIGAAEMASILRPMVTPDAIVRVDNLRNVLVMSGTR
TQAEAWMDLVNTFDVDLLKGMSVGVFPLKYASVKEVEAALRVVSGGGGSAPGAVPGTPAGAAAAAAAGANQANAAPVTLG
EGNPLFGALRIMPIERINSILVVTPRAAYLDEARRWIEKLDQPSDNGAEPQLFIYHVQNGNAKHLAGVLSGIFGGQAGGS
VANSGVAPGLGGTSSNSYGSSGFGNSSFNNGFGSSGFGNSPFGGGFGSSGGFGSSGGFGSSGGFGGGFSSGSGFGSFQGN
RGNQNQAGTQQGAVSANLGGVRLMADELNNSVLVWGTKANYMKIEATLKRLDLPPTQVLIEASIVEVTLDDTLQYGLQWA
FNNAGPSNLNGAGQLLTNGPSDKTPIGSSIPTPTSSGFSYALSNSLGSVRVVLNALATKRLLKVISSPSLMVLDNHTAMM
SVGNQQPVKTGSLITSVSGGNSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGSISLQPVFQQRQITS
KVAVRSGEAIVLGGLIRDTSNSSKSGVPLLQDIPLVGSLFSNNGKTGNRTELLVVITPKVVRTDIDIREVSDELRDRLKG
LQIIELKENGRTPAAPSGTSTTIQPLPPQ

Sequences:

>Translated_829_residues
MIFYRYALTSIAMAVCQLAAAQTAAPGGAPSTNVVTESGSAPAAVGSGAATDGTAAGKAGGGAAAGDDQGGQPRILRGTD
KVLADPKPVPALTGAPMTFSFEEAPVAEVVRTVLGDIAKANYVLHPPLNGTVTLATRNPIPPDQAMFLLESALQANGLGM
IRDARGTYHVGRPDALRAIGGTLRQFRSGEPLPPGNGAVIIPLQYIGAAEMASILRPMVTPDAIVRVDNLRNVLVMSGTR
TQAEAWMDLVNTFDVDLLKGMSVGVFPLKYASVKEVEAALRVVSGGGGSAPGAVPGTPAGAAAAAAAGANQANAAPVTLG
EGNPLFGALRIMPIERINSILVVTPRAAYLDEARRWIEKLDQPSDNGAEPQLFIYHVQNGNAKHLAGVLSGIFGGQAGGS
VANSGVAPGLGGTSSNSYGSSGFGNSSFNNGFGSSGFGNSPFGGGFGSSGGFGSSGGFGSSGGFGGGFSSGSGFGSFQGN
RGNQNQAGTQQGAVSANLGGVRLMADELNNSVLVWGTKANYMKIEATLKRLDLPPTQVLIEASIVEVTLDDTLQYGLQWA
FNNAGPSNLNGAGQLLTNGPSDKTPIGSSIPTPTSSGFSYALSNSLGSVRVVLNALATKRLLKVISSPSLMVLDNHTAMM
SVGNQQPVKTGSLITSVSGGNSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGSISLQPVFQQRQITS
KVAVRSGEAIVLGGLIRDTSNSSKSGVPLLQDIPLVGSLFSNNGKTGNRTELLVVITPKVVRTDIDIREVSDELRDRLKG
LQIIELKENGRTPAAPSGTSTTIQPLPPQ
>Mature_829_residues
MIFYRYALTSIAMAVCQLAAAQTAAPGGAPSTNVVTESGSAPAAVGSGAATDGTAAGKAGGGAAAGDDQGGQPRILRGTD
KVLADPKPVPALTGAPMTFSFEEAPVAEVVRTVLGDIAKANYVLHPPLNGTVTLATRNPIPPDQAMFLLESALQANGLGM
IRDARGTYHVGRPDALRAIGGTLRQFRSGEPLPPGNGAVIIPLQYIGAAEMASILRPMVTPDAIVRVDNLRNVLVMSGTR
TQAEAWMDLVNTFDVDLLKGMSVGVFPLKYASVKEVEAALRVVSGGGGSAPGAVPGTPAGAAAAAAAGANQANAAPVTLG
EGNPLFGALRIMPIERINSILVVTPRAAYLDEARRWIEKLDQPSDNGAEPQLFIYHVQNGNAKHLAGVLSGIFGGQAGGS
VANSGVAPGLGGTSSNSYGSSGFGNSSFNNGFGSSGFGNSPFGGGFGSSGGFGSSGGFGSSGGFGGGFSSGSGFGSFQGN
RGNQNQAGTQQGAVSANLGGVRLMADELNNSVLVWGTKANYMKIEATLKRLDLPPTQVLIEASIVEVTLDDTLQYGLQWA
FNNAGPSNLNGAGQLLTNGPSDKTPIGSSIPTPTSSGFSYALSNSLGSVRVVLNALATKRLLKVISSPSLMVLDNHTAMM
SVGNQQPVKTGSLITSVSGGNSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGSISLQPVFQQRQITS
KVAVRSGEAIVLGGLIRDTSNSSKSGVPLLQDIPLVGSLFSNNGKTGNRTELLVVITPKVVRTDIDIREVSDELRDRLKG
LQIIELKENGRTPAAPSGTSTTIQPLPPQ

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=313, Percent_Identity=35.7827476038339, Blast_Score=152, Evalue=1e-37,
Organism=Escherichia coli, GI1789793, Length=285, Percent_Identity=30.1754385964912, Blast_Score=105, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 84558; Mature: 84558

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFYRYALTSIAMAVCQLAAAQTAAPGGAPSTNVVTESGSAPAAVGSGAATDGTAAGKAG
CEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
GGAAAGDDQGGQPRILRGTDKVLADPKPVPALTGAPMTFSFEEAPVAEVVRTVLGDIAKA
CCCCCCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHC
NYVLHPPLNGTVTLATRNPIPPDQAMFLLESALQANGLGMIRDARGTYHVGRPDALRAIG
CEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEECCCCHHHHHHH
GTLRQFRSGEPLPPGNGAVIIPLQYIGAAEMASILRPMVTPDAIVRVDNLRNVLVMSGTR
HHHHHHCCCCCCCCCCCEEEEEEHHCCHHHHHHHHHHCCCCHHEEEECCCCEEEEECCCC
TQAEAWMDLVNTFDVDLLKGMSVGVFPLKYASVKEVEAALRVVSGGGGSAPGAVPGTPAG
HHHHHHHHHHHHCCHHHHCCCCCCEEEECHHHHHHHHHHHHEEECCCCCCCCCCCCCCCC
AAAAAAAGANQANAAPVTLGEGNPLFGALRIMPIERINSILVVTPRAAYLDEARRWIEKL
HHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEEHHHCCEEEEECCCHHHHHHHHHHHHHH
DQPSDNGAEPQLFIYHVQNGNAKHLAGVLSGIFGGQAGGSVANSGVAPGLGGTSSNSYGS
CCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
SGFGNSSFNNGFGSSGFGNSPFGGGFGSSGGFGSSGGFGSSGGFGGGFSSGSGFGSFQGN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RGNQNQAGTQQGAVSANLGGVRLMADELNNSVLVWGTKANYMKIEATLKRLDLPPTQVLI
CCCCCCCCCCCCCEEECCCCEEEEEEHHCCCEEEEECCCCEEEEEEHHHHCCCCHHHEEE
EASIVEVTLDDTLQYGLQWAFNNAGPSNLNGAGQLLTNGPSDKTPIGSSIPTPTSSGFSY
EEEEEEEEHHHHHHHCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH
ALSNSLGSVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTGSLITSVSGG
HHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEECCCCCCCCCCCEEEEECCC
NSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGSISLQPVFQQRQITS
CCHHHHEEEECCCEEEEEECCCCCCCEEEEEEHHHHHHHHCCCCCCEEEEHHHHHHHHHH
KVAVRSGEAIVLGGLIRDTSNSSKSGVPLLQDIPLVGSLFSNNGKTGNRTELLVVITPKV
HHHHCCCCEEEEEEEEECCCCCCCCCCCHHHCCCHHHHHHCCCCCCCCCEEEEEEECCHH
VRTDIDIREVSDELRDRLKGLQIIELKENGRTPAAPSGTSTTIQPLPPQ
HCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIFYRYALTSIAMAVCQLAAAQTAAPGGAPSTNVVTESGSAPAAVGSGAATDGTAAGKAG
CEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
GGAAAGDDQGGQPRILRGTDKVLADPKPVPALTGAPMTFSFEEAPVAEVVRTVLGDIAKA
CCCCCCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHC
NYVLHPPLNGTVTLATRNPIPPDQAMFLLESALQANGLGMIRDARGTYHVGRPDALRAIG
CEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEECCCCHHHHHHH
GTLRQFRSGEPLPPGNGAVIIPLQYIGAAEMASILRPMVTPDAIVRVDNLRNVLVMSGTR
HHHHHHCCCCCCCCCCCEEEEEEHHCCHHHHHHHHHHCCCCHHEEEECCCCEEEEECCCC
TQAEAWMDLVNTFDVDLLKGMSVGVFPLKYASVKEVEAALRVVSGGGGSAPGAVPGTPAG
HHHHHHHHHHHHCCHHHHCCCCCCEEEECHHHHHHHHHHHHEEECCCCCCCCCCCCCCCC
AAAAAAAGANQANAAPVTLGEGNPLFGALRIMPIERINSILVVTPRAAYLDEARRWIEKL
HHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEEHHHCCEEEEECCCHHHHHHHHHHHHHH
DQPSDNGAEPQLFIYHVQNGNAKHLAGVLSGIFGGQAGGSVANSGVAPGLGGTSSNSYGS
CCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
SGFGNSSFNNGFGSSGFGNSPFGGGFGSSGGFGSSGGFGSSGGFGGGFSSGSGFGSFQGN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RGNQNQAGTQQGAVSANLGGVRLMADELNNSVLVWGTKANYMKIEATLKRLDLPPTQVLI
CCCCCCCCCCCCCEEECCCCEEEEEEHHCCCEEEEECCCCEEEEEEHHHHCCCCHHHEEE
EASIVEVTLDDTLQYGLQWAFNNAGPSNLNGAGQLLTNGPSDKTPIGSSIPTPTSSGFSY
EEEEEEEEHHHHHHHCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH
ALSNSLGSVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTGSLITSVSGG
HHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEECCCCCCCCCCCEEEEECCC
NSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGSISLQPVFQQRQITS
CCHHHHEEEECCCEEEEEECCCCCCCEEEEEEHHHHHHHHCCCCCCEEEEHHHHHHHHHH
KVAVRSGEAIVLGGLIRDTSNSSKSGVPLLQDIPLVGSLFSNNGKTGNRTELLVVITPKV
HHHHCCCCEEEEEEEEECCCCCCCCCCCHHHCCCHHHHHHCCCCCCCCCEEEEEEECCHH
VRTDIDIREVSDELRDRLKGLQIIELKENGRTPAAPSGTSTTIQPLPPQ
HCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]