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The map label for this gene is slmA [H]

Identifier: 120612773

GI number: 120612773

Start: 4586158

End: 4586832

Strand: Reverse

Name: slmA [H]

Synonym: Aave_4136

Alternate gene names: 120612773

Gene position: 4586832-4586158 (Counterclockwise)

Preceding gene: 120612774

Following gene: 120612752

Centisome position: 85.69

GC content: 70.52

Gene sequence:

>675_bases
ATGGCTGAATCCTTTTCCCATCCCAACAACGACGGCGCGGAAGCCGGCGATGCGGCACCTGCGGCACCTGCCCGCCGGCG
CCCCAAGCCGGGTGAGCGGCGGGTGCAGATCCTGCAGACTCTGGCGGCCATGCTGGAGCAGCCCGGCGGCGAGCGGATCA
CGACGGCTGCCCTGGCTGCGCGGCTGGAGGTGAGCGAGGCGGCCCTGTACCGGCACTTCGCCAGCAAGGCGCAGATGTTC
GAAGGCCTCATCGAATTCATCGAGCAATCGGTCTTCGCGCTCGTCGCCCAGATCGTGGAGCGCGACATGCCGGATGCTCC
CCATGCCACGGAAGGGACTCGCCGCGCCGCCCGCGTGGTGGCCATGGTCCTGCAGTTCGGCGAGCGCAATCCCGGCATGG
TGCGCGTGATGGTGGGCGATGCGCTCGTCTTCGAACACGAGCGGCTGCAGCAGCGCATGGGCCAGTTCTTCGACCGGATC
GAATCCACGCTGCGCCAGTGCCTGCGGGGGGCCGCCGAAGCGGCCGGCTCCGCCACCCCGACGGTCGATGCGCATGTGCG
CGCGGCCGTGCTGTGCGACCTCCTGCGCGGCAGGCTGCAGCGCTATGCGCGCAGCGGGCTGCGCCGCCCGCCGACCGAGC
ACCTCGACGCCACGCTCGCATTGCTGCTGCACTGA

Upstream 100 bases:

>100_bases
TGCCAGCGTTTCCCTTCCGGCATAGGTGCGTGGAGCGCGAGCCGGCGGTCATCGTGCGGCAGAGGCGGTATGCGAGAATC
AATTGCATACATTTGCGGCC

Downstream 100 bases:

>100_bases
GCGTCAGGCCCGCAGTCGGATGGGGGGGTGACCGGTATGGCACTGCCCGGACCTGTGGATAAGTTGGGCGATCGCTAATG
CTGGCGCGGGTTTCCGGCCG

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MAESFSHPNNDGAEAGDAAPAAPARRRPKPGERRVQILQTLAAMLEQPGGERITTAALAARLEVSEAALYRHFASKAQMF
EGLIEFIEQSVFALVAQIVERDMPDAPHATEGTRRAARVVAMVLQFGERNPGMVRVMVGDALVFEHERLQQRMGQFFDRI
ESTLRQCLRGAAEAAGSATPTVDAHVRAAVLCDLLRGRLQRYARSGLRRPPTEHLDATLALLLH

Sequences:

>Translated_224_residues
MAESFSHPNNDGAEAGDAAPAAPARRRPKPGERRVQILQTLAAMLEQPGGERITTAALAARLEVSEAALYRHFASKAQMF
EGLIEFIEQSVFALVAQIVERDMPDAPHATEGTRRAARVVAMVLQFGERNPGMVRVMVGDALVFEHERLQQRMGQFFDRI
ESTLRQCLRGAAEAAGSATPTVDAHVRAAVLCDLLRGRLQRYARSGLRRPPTEHLDATLALLLH
>Mature_223_residues
AESFSHPNNDGAEAGDAAPAAPARRRPKPGERRVQILQTLAAMLEQPGGERITTAALAARLEVSEAALYRHFASKAQMFE
GLIEFIEQSVFALVAQIVERDMPDAPHATEGTRRAARVVAMVLQFGERNPGMVRVMVGDALVFEHERLQQRMGQFFDRIE
STLRQCLRGAAEAAGSATPTVDAHVRAAVLCDLLRGRLQRYARSGLRRPPTEHLDATLALLLH

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=200, Percent_Identity=44.5, Blast_Score=141, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24569; Mature: 24438

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAESFSHPNNDGAEAGDAAPAAPARRRPKPGERRVQILQTLAAMLEQPGGERITTAALAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RLEVSEAALYRHFASKAQMFEGLIEFIEQSVFALVAQIVERDMPDAPHATEGTRRAARVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AMVLQFGERNPGMVRVMVGDALVFEHERLQQRMGQFFDRIESTLRQCLRGAAEAAGSATP
HHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TVDAHVRAAVLCDLLRGRLQRYARSGLRRPPTEHLDATLALLLH
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AESFSHPNNDGAEAGDAAPAAPARRRPKPGERRVQILQTLAAMLEQPGGERITTAALAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RLEVSEAALYRHFASKAQMFEGLIEFIEQSVFALVAQIVERDMPDAPHATEGTRRAARVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AMVLQFGERNPGMVRVMVGDALVFEHERLQQRMGQFFDRIESTLRQCLRGAAEAAGSATP
HHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TVDAHVRAAVLCDLLRGRLQRYARSGLRRPPTEHLDATLALLLH
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA