Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is insF1 [C]
Identifier: 120612755
GI number: 120612755
Start: 4574604
End: 4575461
Strand: Direct
Name: insF1 [C]
Synonym: Aave_4118
Alternate gene names: 120612755
Gene position: 4574604-4575461 (Clockwise)
Preceding gene: 120612754
Following gene: 120612756
Centisome position: 85.46
GC content: 68.18
Gene sequence:
>858_bases ATGTGCCGGGTGCTGGGCGTGTCCCACAGCGGCTTCTACGACTGGCGGCACCGAGCGCCAAGCCAGCGCGCGATGGAGGA CATGGTGCTCACCGAGCGGATCAGGCAGGTGCACGCCGAGTCCCGCGAGACCTACGGCCAGCCACGCGTGCGGGCCGAGT TGGCCGCACAGGGCGTGCGCGTCGCAGGCAAGCGGATCGCCCGCCTCATGCGCCAGGCAGGCCTGCAGGGGATCAGCAAA CGACGGGCGACCACGGTGACCACGCGGCGTGACCCACGCGAGCGTCCAGCGGCGGACCTCGTGATGCGACGCTTCCGCGC CGAGCGAGCGAACCAGCTGTGGGTGGCCGACATGACCTATGTGCCGACGTGGGCAGGCTTCGTCTACCTGGCGGTGGTGA TGGACGTCTTCAGCCGGCGCATCGTCGGCTGGTCGATGGGAGAGCGCATGACCGCGCAACTCGTGCTGGCGGCGCTGAAC ATGGCATTGGCCCGACGCAAGCCCCAGGGTGTCATCCACCACTCGGACCAGGGCAGCCAGTACACCAGCCTGGCGTTCGG GCAACGCTGCGCCGAGATGGGTGTGCGCCCGTCGATGGGCAGTGTGGGTGACGCGTACGACAACGCCATGGCCGAGAGCT TCTTCGCCACGCTCGAATGCGAGCTGATCGAGCGGCGCAGCTTCCGATCGAAGGCGGAGGCGAAGGCCGCGGTGTTCAGC TACATCGAGGGCTGGTACAACCCGCGCCGACGCCACTCCGCGCTGAGCTACCACTCACCCGTGGAGTTCGAGCGCCGCGT CGTCGCCGAGGCGTGTCAGGCAACGGAGATCAACGAGAGAGACCAAATCCCGGCTTGA
Upstream 100 bases:
>100_bases TGGCAAAGGCTACGGCCTGGTTCGCCGCCAAGAGCGACAAGACGTTCACGCCGTCTTCGAACTCGTGAACGCGAACCAGG CCGACTTCCCCGTTCGGACG
Downstream 100 bases:
>100_bases GAATCAAGCCGATAACCGTCCGTGGAAGCGGGACAACTTCAGTCCAAGATTTCCGTGAGCCGCAACGGGCGCATTCGGGC TGCGGGGGTGCAGGCATGAC
Product: integrase catalytic subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MCRVLGVSHSGFYDWRHRAPSQRAMEDMVLTERIRQVHAESRETYGQPRVRAELAAQGVRVAGKRIARLMRQAGLQGISK RRATTVTTRRDPRERPAADLVMRRFRAERANQLWVADMTYVPTWAGFVYLAVVMDVFSRRIVGWSMGERMTAQLVLAALN MALARRKPQGVIHHSDQGSQYTSLAFGQRCAEMGVRPSMGSVGDAYDNAMAESFFATLECELIERRSFRSKAEAKAAVFS YIEGWYNPRRRHSALSYHSPVEFERRVVAEACQATEINERDQIPA
Sequences:
>Translated_285_residues MCRVLGVSHSGFYDWRHRAPSQRAMEDMVLTERIRQVHAESRETYGQPRVRAELAAQGVRVAGKRIARLMRQAGLQGISK RRATTVTTRRDPRERPAADLVMRRFRAERANQLWVADMTYVPTWAGFVYLAVVMDVFSRRIVGWSMGERMTAQLVLAALN MALARRKPQGVIHHSDQGSQYTSLAFGQRCAEMGVRPSMGSVGDAYDNAMAESFFATLECELIERRSFRSKAEAKAAVFS YIEGWYNPRRRHSALSYHSPVEFERRVVAEACQATEINERDQIPA >Mature_285_residues MCRVLGVSHSGFYDWRHRAPSQRAMEDMVLTERIRQVHAESRETYGQPRVRAELAAQGVRVAGKRIARLMRQAGLQGISK RRATTVTTRRDPRERPAADLVMRRFRAERANQLWVADMTYVPTWAGFVYLAVVMDVFSRRIVGWSMGERMTAQLVLAALN MALARRKPQGVIHHSDQGSQYTSLAFGQRCAEMGVRPSMGSVGDAYDNAMAESFFATLECELIERRSFRSKAEAKAAVFS YIEGWYNPRRRHSALSYHSPVEFERRVVAEACQATEINERDQIPA
Specific function: Involved in the transposition of the insertion sequence [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 integrase catalytic domain [H]
Homologues:
Organism=Homo sapiens, GI310129419, Length=232, Percent_Identity=41.3793103448276, Blast_Score=174, Evalue=6e-44, Organism=Escherichia coli, GI1788405, Length=273, Percent_Identity=41.025641025641, Blast_Score=180, Evalue=7e-47, Organism=Escherichia coli, GI1787263, Length=273, Percent_Identity=41.025641025641, Blast_Score=180, Evalue=7e-47, Organism=Escherichia coli, GI1786753, Length=273, Percent_Identity=41.025641025641, Blast_Score=180, Evalue=7e-47, Organism=Escherichia coli, GI1786570, Length=273, Percent_Identity=41.025641025641, Blast_Score=180, Evalue=7e-47, Organism=Escherichia coli, GI1786490, Length=273, Percent_Identity=41.025641025641, Blast_Score=180, Evalue=7e-47, Organism=Escherichia coli, GI1789981, Length=235, Percent_Identity=31.9148936170213, Blast_Score=122, Evalue=4e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001584 - InterPro: IPR012337 [H]
Pfam domain/function: PF00665 rve [H]
EC number: NA
Molecular weight: Translated: 32445; Mature: 32445
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: PS50994 INTEGRASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCRVLGVSHSGFYDWRHRAPSQRAMEDMVLTERIRQVHAESRETYGQPRVRAELAAQGVR CCEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH VAGKRIARLMRQAGLQGISKRRATTVTTRRDPRERPAADLVMRRFRAERANQLWVADMTY HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCHH VPTWAGFVYLAVVMDVFSRRIVGWSMGERMTAQLVLAALNMALARRKPQGVIHHSDQGSQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCH YTSLAFGQRCAEMGVRPSMGSVGDAYDNAMAESFFATLECELIERRSFRSKAEAKAAVFS HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YIEGWYNPRRRHSALSYHSPVEFERRVVAEACQATEINERDQIPA HHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MCRVLGVSHSGFYDWRHRAPSQRAMEDMVLTERIRQVHAESRETYGQPRVRAELAAQGVR CCEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH VAGKRIARLMRQAGLQGISKRRATTVTTRRDPRERPAADLVMRRFRAERANQLWVADMTY HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCHH VPTWAGFVYLAVVMDVFSRRIVGWSMGERMTAQLVLAALNMALARRKPQGVIHHSDQGSQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCH YTSLAFGQRCAEMGVRPSMGSVGDAYDNAMAESFFATLECELIERRSFRSKAEAKAAVFS HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YIEGWYNPRRRHSALSYHSPVEFERRVVAEACQATEINERDQIPA HHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2159625; 2824781 [H]