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The map label for this gene is rlpA [C]

Identifier: 120612693

GI number: 120612693

Start: 4506853

End: 4507179

Strand: Reverse

Name: rlpA [C]

Synonym: Aave_4056

Alternate gene names: 120612693

Gene position: 4507179-4506853 (Counterclockwise)

Preceding gene: 120612694

Following gene: 120612691

Centisome position: 84.2

GC content: 73.09

Gene sequence:

>327_bases
ATGGCCTCGTGGTATGGCGCCCGCTTCCACAGCCGCCGCACCGCCAGCGGCGAGCGGTTCGACATGAACGACTTCACGGC
CGCGCACCGCACGCTGCCCTTCGGCACGCGCATCTGCGTCCGCAGCCTCGTGACCGGGCGCTCGGTCCAGGTGCGCATCA
ACGACCGGGGGCCCCATTCGCCCGGGCGCATCGTGGACCTGAGCCGGGCGGCCGCGCAATCCCTCGGCCTGTTGGGCCTG
GGCATCAAGCCGGTGGCGATCAGCCTGGCGCCCGCGGATCCGGATGCACCCTGTCCCGGTTCCCGGAACGACCCGGCGGC
GCCGTGA

Upstream 100 bases:

>100_bases
GGCCGACCGGTCGCGGGAGCAGCGGGCGCAGGAAGACGAGCGCTCCTCGGGGACAGGACTCGACCTGGATGGCGAACTGG
CAGGATTCGGCGAGGAGGGC

Downstream 100 bases:

>100_bases
CCGGCCTCAGCCGCCTGACTCGAGGCTGTGGGCGGCGTGCTGCGCGTCCTGGGCCAGCAGCTGCGCCATCTGGGGCAGGG
CAGGCTGCAGCGCCGCCTTG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MASWYGARFHSRRTASGERFDMNDFTAAHRTLPFGTRICVRSLVTGRSVQVRINDRGPHSPGRIVDLSRAAAQSLGLLGL
GIKPVAISLAPADPDAPCPGSRNDPAAP

Sequences:

>Translated_108_residues
MASWYGARFHSRRTASGERFDMNDFTAAHRTLPFGTRICVRSLVTGRSVQVRINDRGPHSPGRIVDLSRAAAQSLGLLGL
GIKPVAISLAPADPDAPCPGSRNDPAAP
>Mature_107_residues
ASWYGARFHSRRTASGERFDMNDFTAAHRTLPFGTRICVRSLVTGRSVQVRINDRGPHSPGRIVDLSRAAAQSLGLLGLG
IKPVAISLAPADPDAPCPGSRNDPAAP

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=75, Percent_Identity=49.3333333333333, Blast_Score=69, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 11507; Mature: 11376

Theoretical pI: Translated: 11.51; Mature: 11.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASWYGARFHSRRTASGERFDMNDFTAAHRTLPFGTRICVRSLVTGRSVQVRINDRGPHS
CCCCCCCCCCCCCCCCCCEECCCCCCHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCC
PGRIVDLSRAAAQSLGLLGLGIKPVAISLAPADPDAPCPGSRNDPAAP
CCCEEEHHHHHHHHCCEECCCCCCEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASWYGARFHSRRTASGERFDMNDFTAAHRTLPFGTRICVRSLVTGRSVQVRINDRGPHS
CCCCCCCCCCCCCCCCCEECCCCCCHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCC
PGRIVDLSRAAAQSLGLLGLGIKPVAISLAPADPDAPCPGSRNDPAAP
CCCEEEHHHHHHHHCCEECCCCCCEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]