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The map label for this gene is yebA [H]

Identifier: 120612683

GI number: 120612683

Start: 4496933

End: 4498294

Strand: Direct

Name: yebA [H]

Synonym: Aave_4046

Alternate gene names: 120612683

Gene position: 4496933-4498294 (Clockwise)

Preceding gene: 120612681

Following gene: 120612684

Centisome position: 84.01

GC content: 69.82

Gene sequence:

>1362_bases
TTGAACAACGGCTTGACATCCGCCGGCCTTGCATTGCTGGATCGGCTCTCGCGCTTCGCCCGGACCCATCCCAAACGCAT
CACCGCAGCGGTCGCGGCCATTCTGCTCACCGGTGGAGGCGGCGCCTTCGCCGTGGCGTCGTTCGCCCCCGATCCGGGCG
ACCTGCCCCGCACCATCGTCGCGTACCCCGTCGAGTCCCTCGCAGGCGACCAGCCGCTCTCCGCGCTGGTGGACATCCCC
AGCTATTCGCTCTACCGCACCGACCAGACCCGCAGCAGCGACACGGCCGAAGCCATCCTGCAGCGCCTGGGCGTGGCCGA
CCCCGAGGCCGCCGCATTCCTGCGCGGCGACGGGCAGGTGCGCCAGAACCTGCTGGGCCGCGGCGGCCGCTCCGTGTCCG
CCGAAACCACCGAGGACCACCGGCTGGTAAAGCTCACGGCACGCTGGGTGCAGGACGACAGCGGCAACTTCCAGCGTCTC
GTGGTCGAGCGCCAGGGCGGCGCGTTCGCCTCCCGCATCGAGACGGCGCCCCTCACCGTGGGCAACCGGCTGGCCGGCGG
CATCATCCGCAGCTCGCTCTTCGCCGCCACCGACGCGGCCAGCATTCCCGACGCCGTGGCCATCCAGCTGGCGGAAGTGT
TCTCGAGCAACATCGATTTCCACCGGGCGCTGCGCAAGGAAGACCGCTTCTCGGTGGTGTACGAGACGCTGGAAGCCGAC
GGCGAGCCGCTGCGCAGCGGCCGCGTGCTCAGCGCCGAGTTCCACAACAACGGCAAGACCTACGATGCCGTCTGGTTCCA
GGAATCGGGAGCGGCCAAGGGCTCGTACTACACGCTGGAAGGCGAGAGCATGCGCCGCGCCTACCTCGCCTCGCCGGTGG
AGTTCTCGCGCGTGACCAGCGGCTTCAAGATGCGCTTCCATCCCATCCTGCAGAAGTGGCGCGCCCACCTCGGCACGGAT
TTCGCCGCGCCCACCGGCACGGCCGTGCGCACCGTCGGGGACGGCACGGTGGACTTCGCCGGCGTGCAGAACGGCTACGG
CAACGTCATCTACATCAGGCACAACAACCAGCACGTGACGGTGTACGCGCACCTGAGCCGCATCGACGTGCGCAAGGGCC
AGACCGTGGTGCAGGGCCAGACCATCGGCGCCGTCGGCGCGACGGGCTGGGCGACGGCCTCCCACCTCCACTTCGAATCG
CGCGTGAACGGCCAGCACCAGGATCCGATGGTCCTCGCACAGCAGAGCGCGGCGGCCCAGCCCGTCTCGGCCGCTTCGCG
CGCAGCGTTCAACCGCCTGGCAGCGAACATGCGCGTGCAGCTGGCTTCGGCCGCGCAGGTGCAGCAGGCCAGCGCGCAAT
GA

Upstream 100 bases:

>100_bases
TCCGCCTTCCGGCCCGGTGCCAGCAGCCGCTGAGACCACGGACATCCCGCACATGCCGCCTTCCCGGGCCTGCATGCGCT
TCACCCTGGGGTACAGACTC

Downstream 100 bases:

>100_bases
CCGCGACGACCTCCCCCTGAGCGGCTGCGCCGCGTCCCGCCGCCCGTGACCCCGGCCGCCGCCACCGAACGCTACATCGG
CATCATGTCCGGCACCTCGC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MNNGLTSAGLALLDRLSRFARTHPKRITAAVAAILLTGGGGAFAVASFAPDPGDLPRTIVAYPVESLAGDQPLSALVDIP
SYSLYRTDQTRSSDTAEAILQRLGVADPEAAAFLRGDGQVRQNLLGRGGRSVSAETTEDHRLVKLTARWVQDDSGNFQRL
VVERQGGAFASRIETAPLTVGNRLAGGIIRSSLFAATDAASIPDAVAIQLAEVFSSNIDFHRALRKEDRFSVVYETLEAD
GEPLRSGRVLSAEFHNNGKTYDAVWFQESGAAKGSYYTLEGESMRRAYLASPVEFSRVTSGFKMRFHPILQKWRAHLGTD
FAAPTGTAVRTVGDGTVDFAGVQNGYGNVIYIRHNNQHVTVYAHLSRIDVRKGQTVVQGQTIGAVGATGWATASHLHFES
RVNGQHQDPMVLAQQSAAAQPVSAASRAAFNRLAANMRVQLASAAQVQQASAQ

Sequences:

>Translated_453_residues
MNNGLTSAGLALLDRLSRFARTHPKRITAAVAAILLTGGGGAFAVASFAPDPGDLPRTIVAYPVESLAGDQPLSALVDIP
SYSLYRTDQTRSSDTAEAILQRLGVADPEAAAFLRGDGQVRQNLLGRGGRSVSAETTEDHRLVKLTARWVQDDSGNFQRL
VVERQGGAFASRIETAPLTVGNRLAGGIIRSSLFAATDAASIPDAVAIQLAEVFSSNIDFHRALRKEDRFSVVYETLEAD
GEPLRSGRVLSAEFHNNGKTYDAVWFQESGAAKGSYYTLEGESMRRAYLASPVEFSRVTSGFKMRFHPILQKWRAHLGTD
FAAPTGTAVRTVGDGTVDFAGVQNGYGNVIYIRHNNQHVTVYAHLSRIDVRKGQTVVQGQTIGAVGATGWATASHLHFES
RVNGQHQDPMVLAQQSAAAQPVSAASRAAFNRLAANMRVQLASAAQVQQASAQ
>Mature_453_residues
MNNGLTSAGLALLDRLSRFARTHPKRITAAVAAILLTGGGGAFAVASFAPDPGDLPRTIVAYPVESLAGDQPLSALVDIP
SYSLYRTDQTRSSDTAEAILQRLGVADPEAAAFLRGDGQVRQNLLGRGGRSVSAETTEDHRLVKLTARWVQDDSGNFQRL
VVERQGGAFASRIETAPLTVGNRLAGGIIRSSLFAATDAASIPDAVAIQLAEVFSSNIDFHRALRKEDRFSVVYETLEAD
GEPLRSGRVLSAEFHNNGKTYDAVWFQESGAAKGSYYTLEGESMRRAYLASPVEFSRVTSGFKMRFHPILQKWRAHLGTD
FAAPTGTAVRTVGDGTVDFAGVQNGYGNVIYIRHNNQHVTVYAHLSRIDVRKGQTVVQGQTIGAVGATGWATASHLHFES
RVNGQHQDPMVLAQQSAAAQPVSAASRAAFNRLAANMRVQLASAAQVQQASAQ

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=322, Percent_Identity=29.5031055900621, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI1789099, Length=94, Percent_Identity=40.4255319148936, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87082174, Length=94, Percent_Identity=40.4255319148936, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48546; Mature: 48546

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNGLTSAGLALLDRLSRFARTHPKRITAAVAAILLTGGGGAFAVASFAPDPGDLPRTIV
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCHHE
AYPVESLAGDQPLSALVDIPSYSLYRTDQTRSSDTAEAILQRLGVADPEAAAFLRGDGQV
ECCHHHHCCCCCCHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCHHEEECCCHHH
RQNLLGRGGRSVSAETTEDHRLVKLTARWVQDDSGNFQRLVVERQGGAFASRIETAPLTV
HHHHHCCCCCCCCCCCCCCCEEEEEEEHHHCCCCCCEEEEEEEECCCHHHHHHCCCCCCC
GNRLAGGIIRSSLFAATDAASIPDAVAIQLAEVFSSNIDFHRALRKEDRFSVVYETLEAD
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCC
GEPLRSGRVLSAEFHNNGKTYDAVWFQESGAAKGSYYTLEGESMRRAYLASPVEFSRVTS
CCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEECCHHHHHHHHCCCCHHHHHCC
GFKMRFHPILQKWRAHLGTDFAAPTGTAVRTVGDGTVDFAGVQNGYGNVIYIRHNNQHVT
CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEECCCCCCCCCEEEEEECCCEEE
VYAHLSRIDVRKGQTVVQGQTIGAVGATGWATASHLHFESRVNGQHQDPMVLAQQSAAAQ
EEEEEEEEECCCCCEEEECCEECCCCCCCCCHHHHEEEHHHCCCCCCCCEEEECCCCCCC
PVSAASRAAFNRLAANMRVQLASAAQVQQASAQ
CHHHHHHHHHHHHHHHHEEEEHHHHHHHHHCCC
>Mature Secondary Structure
MNNGLTSAGLALLDRLSRFARTHPKRITAAVAAILLTGGGGAFAVASFAPDPGDLPRTIV
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCHHE
AYPVESLAGDQPLSALVDIPSYSLYRTDQTRSSDTAEAILQRLGVADPEAAAFLRGDGQV
ECCHHHHCCCCCCHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCHHEEECCCHHH
RQNLLGRGGRSVSAETTEDHRLVKLTARWVQDDSGNFQRLVVERQGGAFASRIETAPLTV
HHHHHCCCCCCCCCCCCCCCEEEEEEEHHHCCCCCCEEEEEEEECCCHHHHHHCCCCCCC
GNRLAGGIIRSSLFAATDAASIPDAVAIQLAEVFSSNIDFHRALRKEDRFSVVYETLEAD
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCC
GEPLRSGRVLSAEFHNNGKTYDAVWFQESGAAKGSYYTLEGESMRRAYLASPVEFSRVTS
CCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEECCHHHHHHHHCCCCHHHHHCC
GFKMRFHPILQKWRAHLGTDFAAPTGTAVRTVGDGTVDFAGVQNGYGNVIYIRHNNQHVT
CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEECCCCCCCCCEEEEEECCCEEE
VYAHLSRIDVRKGQTVVQGQTIGAVGATGWATASHLHFESRVNGQHQDPMVLAQQSAAAQ
EEEEEEEEECCCCCEEEECCEECCCCCCCCCHHHHEEEHHHCCCCCCCCEEEECCCCCCC
PVSAASRAAFNRLAANMRVQLASAAQVQQASAQ
CHHHHHHHHHHHHHHHHEEEEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]