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The map label for this gene is ybaO [C]

Identifier: 120612674

GI number: 120612674

Start: 4489067

End: 4489558

Strand: Direct

Name: ybaO [C]

Synonym: Aave_4037

Alternate gene names: 120612674

Gene position: 4489067-4489558 (Clockwise)

Preceding gene: 120612672

Following gene: 120612678

Centisome position: 83.86

GC content: 68.5

Gene sequence:

>492_bases
ATGGAATCCCTTGCACTCGACGCCACCGATACGCGTCTGCTCGACCTGCTGCAGACCGACGCGAGCCTGAGCAACCAGGC
CCTGGCAGAACTGGCGCACGTCTCTCCGCCGACATGCCTGCGCCGCATCAAGCGGCTGCATGACCTCGGGCTGGTGGAAC
GGCAGGTAGCCATCCTGCGGCCCGACCGGCTGGCACAGCTGCAGGGCCACGGGCTGACGGCCTTCGTCGAGGTGACGCTG
GACCGCCAGGGGGCGGAAATGCTGGATGCCTTCGAGGCGCGGGCCGTGGCCGACGGGGCGGTGCAGCAATGCTGGCGCGT
GGCGCCGGGCCCGGATTTCATGCTGGTGGTCCACACCCCGGACATGCCCGGCTACCTGGCGCTCACCCAGCGGCTCTTCA
CGGGCGATGCGAACGTGCGCAACGTGAAGGCGTTCTTCGGCGTCAAGCGCGCCAAGTTCGACACGCGCATTCCGCTCTTG
CGGGGCGAATGA

Upstream 100 bases:

>100_bases
GGCACGACCGCATAAAATTTCAGCTCGATTTGCGGCGTTGATTGGACTTTTATTTCATGTATTTTTTATGGAGAAATAAA
ATTTCATCTATAAACGATTC

Downstream 100 bases:

>100_bases
CCGAGGACGCCACGCCCCCTGGGCCGCAGGAACTTCCGGATCGAACGCTTTACGGCGTGGGTGCGTCTGCAGCGCCGGGA
GGCCATGCCAGCACGACGGT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MESLALDATDTRLLDLLQTDASLSNQALAELAHVSPPTCLRRIKRLHDLGLVERQVAILRPDRLAQLQGHGLTAFVEVTL
DRQGAEMLDAFEARAVADGAVQQCWRVAPGPDFMLVVHTPDMPGYLALTQRLFTGDANVRNVKAFFGVKRAKFDTRIPLL
RGE

Sequences:

>Translated_163_residues
MESLALDATDTRLLDLLQTDASLSNQALAELAHVSPPTCLRRIKRLHDLGLVERQVAILRPDRLAQLQGHGLTAFVEVTL
DRQGAEMLDAFEARAVADGAVQQCWRVAPGPDFMLVVHTPDMPGYLALTQRLFTGDANVRNVKAFFGVKRAKFDTRIPLL
RGE
>Mature_163_residues
MESLALDATDTRLLDLLQTDASLSNQALAELAHVSPPTCLRRIKRLHDLGLVERQVAILRPDRLAQLQGHGLTAFVEVTL
DRQGAEMLDAFEARAVADGAVQQCWRVAPGPDFMLVVHTPDMPGYLALTQRLFTGDANVRNVKAFFGVKRAKFDTRIPLL
RGE

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=154, Percent_Identity=33.7662337662338, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787116, Length=152, Percent_Identity=28.2894736842105, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 18014; Mature: 18014

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESLALDATDTRLLDLLQTDASLSNQALAELAHVSPPTCLRRIKRLHDLGLVERQVAILR
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCC
PDRLAQLQGHGLTAFVEVTLDRQGAEMLDAFEARAVADGAVQQCWRVAPGPDFMLVVHTP
CHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
DMPGYLALTQRLFTGDANVRNVKAFFGVKRAKFDTRIPLLRGE
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MESLALDATDTRLLDLLQTDASLSNQALAELAHVSPPTCLRRIKRLHDLGLVERQVAILR
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCC
PDRLAQLQGHGLTAFVEVTLDRQGAEMLDAFEARAVADGAVQQCWRVAPGPDFMLVVHTP
CHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
DMPGYLALTQRLFTGDANVRNVKAFFGVKRAKFDTRIPLLRGE
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]