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The map label for this gene is ydaM [H]

Identifier: 120612636

GI number: 120612636

Start: 4434811

End: 4436586

Strand: Direct

Name: ydaM [H]

Synonym: Aave_3998

Alternate gene names: 120612636

Gene position: 4434811-4436586 (Clockwise)

Preceding gene: 120612630

Following gene: 120612637

Centisome position: 82.85

GC content: 72.41

Gene sequence:

>1776_bases
ATGCGCGCGCGCCGGCATTCCGCAGCGCGACGGCACGCCCCCCTCCGGCGGACCGACAATGCGGCCATGCATCCGATTGC
CCGGCCGTCCCTCCGCCCCTCCAGCCTGCGGGGACAACTCACCCTCTGGTTCGGTGCGCTCACGCTCGCCAGCGTGCTGG
GCGTGGGCTTCTACCTGGGACGCATCGCCACGCAGGACCTCGCGCGCTTCGCGGGGGACCTGCTGCACACCACGGCCCGC
TCGGCCACCGACCTGCTCGCCACCAACCTGCGCGAGCGCGCGCTCGAGATCGACCTGCTGCGCCAGCTGCCGCTGTTCAC
CCAGGGCGACCTGGGCGGCGAGGCCATGCGCCGGGCGCTCGACCAGCGCAAGGACGCGCACAGCGAGTACGCATGGATCG
GCATCGCCTCCCCGGAAGGCCGGGTGCTGCAGGCCACGGGCGGCCTCCTCGTCGGAGAGAAGGTGGACCAGCGCCCCTGG
TTCCGCGACGCCACCACCCGTCTTTTCGTGGGCGACGTGCACGACGCCGTGCTGCTGGCCAAGCGCCTGCCGGAACGTCG
CCTCGACCAGCCGCTGCGCTTCATCGACTTCGCCGCGCCCATCGTGGACGCCAACGGAACGCTGCGCGGCGTGATCGGCG
CCCATGCCCACTGGTACTGGGTGACCGAAACCGTGGAGGCGGTGGCCGTGGACCGTGCGGCGGGGCCCGGCATCGAGGTG
CTCATCGCCGACCGGTCGGGCAATGTGCTCTATCCCTTCCGGCTCGCGGGCCAGAGCCGCCTGCCGGACCGGGCCGCTGC
GTCCGCGCGCTACGAGCGCCTCACGTGGGCCGACGGCACGGAATACCTGAGCAGCACGGTCCCGCTGCCATCCGTGGCGG
GCGCGGACCTCGGCTGGCGCATCGTCGTGCGCCAGCCCGCGGACGAGGCGCTGGCGCCGGCCCGTGCCCTGCGCCGCCAG
CTCGCGCTGCTGGGGCTGGCCGCCGCCCTGCTCTGCGGCCTGGTGGCCTACCGGCTCGCGGCGCGGTTCAGCCGGCCGCT
GGAACTGCTGGCGCGCGCGGCGCACGCCATCGAGCGCCGGGAGGGCGTGCCCCGCTATCCCGACGGCACGGACACCCTCG
AAGTCGCCCAGCTGAACCGTTCCTTCCAGTCCATGACGGCCTCGCTGCTGGAGCGCGAGCAGGAGCTGTCGCGCCTCAAT
ACCTCCCTGGAGAACCAGGTCCGCGAACGCACTCTGGCCCTGCACCAGGCCAACCAGGAACTCGAGAACCTGGCGGTGCG
CGATCCGCTCACCGGGCTCTACAACCGCCGCCGCTTCGACGAAGCGCTGCAGGCGTACACGGCGCGGTGCCGCGAGCTCG
GCCACCGGTTCGCGCTGATGATCGTGGATGCGGACCACTTCAAGCGCGTCAACGACACGCACGGCCACCAGACGGGCGAC
GCGGTGCTGCGGCACCTGGCGGGCGTCATCACCGGCTGCGTGCGCTCCACGGACTTCATCGCCCGGTTCGGCGGCGAGGA
GTTCGTCGTGCTGATGCCCGAACCCCGCGACCGCGAGGAAGGCCGGTTCGTGGCAGAGAAGATCCGCCTGGCCGTGGGCC
ATACGCCCTTCCCCGGCGTGGGCCACCTGACGGTCAGTATCGGCCTGGCCTTCTGCCATGGAGGGGGCGAACCGCTGGCG
ACCATCCTCGAGCGGGCCGACAAGGCCCTCTACCAGGCCAAGGAGGAGGGCCGCGACCGGGTCTGCGTCGCGCCCGCGTC
ACATACCAGCACGTAG

Upstream 100 bases:

>100_bases
TCGGGCGTGAGCGGATCGATGTAGGCCTTGAGTTCTTCGTTGACGATGATGGGCATGGGTGGGTTCGCGCGGGCCGCCAA
AAGGGGCGGCATTGTAGTGA

Downstream 100 bases:

>100_bases
TTCCGGCGGGCGACCAGCTCACGCGTGCCGGCCACGCGCGCGGGCCGGCCGAGATGGGGACGATCCGCCAGCAGCGCGGC
CTTCTTTTGAAAACAGCCCA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 591; Mature: 591

Protein sequence:

>591_residues
MRARRHSAARRHAPLRRTDNAAMHPIARPSLRPSSLRGQLTLWFGALTLASVLGVGFYLGRIATQDLARFAGDLLHTTAR
SATDLLATNLRERALEIDLLRQLPLFTQGDLGGEAMRRALDQRKDAHSEYAWIGIASPEGRVLQATGGLLVGEKVDQRPW
FRDATTRLFVGDVHDAVLLAKRLPERRLDQPLRFIDFAAPIVDANGTLRGVIGAHAHWYWVTETVEAVAVDRAAGPGIEV
LIADRSGNVLYPFRLAGQSRLPDRAAASARYERLTWADGTEYLSSTVPLPSVAGADLGWRIVVRQPADEALAPARALRRQ
LALLGLAAALLCGLVAYRLAARFSRPLELLARAAHAIERREGVPRYPDGTDTLEVAQLNRSFQSMTASLLEREQELSRLN
TSLENQVRERTLALHQANQELENLAVRDPLTGLYNRRRFDEALQAYTARCRELGHRFALMIVDADHFKRVNDTHGHQTGD
AVLRHLAGVITGCVRSTDFIARFGGEEFVVLMPEPRDREEGRFVAEKIRLAVGHTPFPGVGHLTVSIGLAFCHGGGEPLA
TILERADKALYQAKEEGRDRVCVAPASHTST

Sequences:

>Translated_591_residues
MRARRHSAARRHAPLRRTDNAAMHPIARPSLRPSSLRGQLTLWFGALTLASVLGVGFYLGRIATQDLARFAGDLLHTTAR
SATDLLATNLRERALEIDLLRQLPLFTQGDLGGEAMRRALDQRKDAHSEYAWIGIASPEGRVLQATGGLLVGEKVDQRPW
FRDATTRLFVGDVHDAVLLAKRLPERRLDQPLRFIDFAAPIVDANGTLRGVIGAHAHWYWVTETVEAVAVDRAAGPGIEV
LIADRSGNVLYPFRLAGQSRLPDRAAASARYERLTWADGTEYLSSTVPLPSVAGADLGWRIVVRQPADEALAPARALRRQ
LALLGLAAALLCGLVAYRLAARFSRPLELLARAAHAIERREGVPRYPDGTDTLEVAQLNRSFQSMTASLLEREQELSRLN
TSLENQVRERTLALHQANQELENLAVRDPLTGLYNRRRFDEALQAYTARCRELGHRFALMIVDADHFKRVNDTHGHQTGD
AVLRHLAGVITGCVRSTDFIARFGGEEFVVLMPEPRDREEGRFVAEKIRLAVGHTPFPGVGHLTVSIGLAFCHGGGEPLA
TILERADKALYQAKEEGRDRVCVAPASHTST
>Mature_591_residues
MRARRHSAARRHAPLRRTDNAAMHPIARPSLRPSSLRGQLTLWFGALTLASVLGVGFYLGRIATQDLARFAGDLLHTTAR
SATDLLATNLRERALEIDLLRQLPLFTQGDLGGEAMRRALDQRKDAHSEYAWIGIASPEGRVLQATGGLLVGEKVDQRPW
FRDATTRLFVGDVHDAVLLAKRLPERRLDQPLRFIDFAAPIVDANGTLRGVIGAHAHWYWVTETVEAVAVDRAAGPGIEV
LIADRSGNVLYPFRLAGQSRLPDRAAASARYERLTWADGTEYLSSTVPLPSVAGADLGWRIVVRQPADEALAPARALRRQ
LALLGLAAALLCGLVAYRLAARFSRPLELLARAAHAIERREGVPRYPDGTDTLEVAQLNRSFQSMTASLLEREQELSRLN
TSLENQVRERTLALHQANQELENLAVRDPLTGLYNRRRFDEALQAYTARCRELGHRFALMIVDADHFKRVNDTHGHQTGD
AVLRHLAGVITGCVRSTDFIARFGGEEFVVLMPEPRDREEGRFVAEKIRLAVGHTPFPGVGHLTVSIGLAFCHGGGEPLA
TILERADKALYQAKEEGRDRVCVAPASHTST

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=40.1197604790419, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=39.5209580838323, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=37.1951219512195, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1788381, Length=167, Percent_Identity=37.7245508982036, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1788085, Length=181, Percent_Identity=33.7016574585635, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87082007, Length=180, Percent_Identity=35.5555555555556, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=33.5260115606936, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787816, Length=155, Percent_Identity=35.4838709677419, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1787802, Length=184, Percent_Identity=33.1521739130435, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788956, Length=233, Percent_Identity=30.9012875536481, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=32.1637426900585, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=184, Percent_Identity=29.3478260869565, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=27.5641025641026, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1787056, Length=163, Percent_Identity=31.9018404907975, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 65225; Mature: 65225

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRARRHSAARRHAPLRRTDNAAMHPIARPSLRPSSLRGQLTLWFGALTLASVLGVGFYLG
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RIATQDLARFAGDLLHTTARSATDLLATNLRERALEIDLLRQLPLFTQGDLGGEAMRRAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
DQRKDAHSEYAWIGIASPEGRVLQATGGLLVGEKVDQRPWFRDATTRLFVGDVHDAVLLA
HHHHHCCCCEEEEEECCCCCCEEEECCCEEECCCCCCCCCCCCCCCEEEECCHHHHHHHH
KRLPERRLDQPLRFIDFAAPIVDANGTLRGVIGAHAHWYWVTETVEAVAVDRAAGPGIEV
HHCCHHHHCCCHHHHHHHHHEECCCCCEEEHHCCCCEEEEHHHHHHHHHHHCCCCCCEEE
LIADRSGNVLYPFRLAGQSRLPDRAAASARYERLTWADGTEYLSSTVPLPSVAGADLGWR
EEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCEE
IVVRQPADEALAPARALRRQLALLGLAAALLCGLVAYRLAARFSRPLELLARAAHAIERR
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EGVPRYPDGTDTLEVAQLNRSFQSMTASLLEREQELSRLNTSLENQVRERTLALHQANQE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LENLAVRDPLTGLYNRRRFDEALQAYTARCRELGHRFALMIVDADHFKRVNDTHGHQTGD
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEHHHHHCCCCCCCCCHHH
AVLRHLAGVITGCVRSTDFIARFGGEEFVVLMPEPRDREEGRFVAEKIRLAVGHTPFPGV
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC
GHLTVSIGLAFCHGGGEPLATILERADKALYQAKEEGRDRVCVAPASHTST
CEEHEEEEEHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
>Mature Secondary Structure
MRARRHSAARRHAPLRRTDNAAMHPIARPSLRPSSLRGQLTLWFGALTLASVLGVGFYLG
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RIATQDLARFAGDLLHTTARSATDLLATNLRERALEIDLLRQLPLFTQGDLGGEAMRRAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
DQRKDAHSEYAWIGIASPEGRVLQATGGLLVGEKVDQRPWFRDATTRLFVGDVHDAVLLA
HHHHHCCCCEEEEEECCCCCCEEEECCCEEECCCCCCCCCCCCCCCEEEECCHHHHHHHH
KRLPERRLDQPLRFIDFAAPIVDANGTLRGVIGAHAHWYWVTETVEAVAVDRAAGPGIEV
HHCCHHHHCCCHHHHHHHHHEECCCCCEEEHHCCCCEEEEHHHHHHHHHHHCCCCCCEEE
LIADRSGNVLYPFRLAGQSRLPDRAAASARYERLTWADGTEYLSSTVPLPSVAGADLGWR
EEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCEE
IVVRQPADEALAPARALRRQLALLGLAAALLCGLVAYRLAARFSRPLELLARAAHAIERR
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EGVPRYPDGTDTLEVAQLNRSFQSMTASLLEREQELSRLNTSLENQVRERTLALHQANQE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LENLAVRDPLTGLYNRRRFDEALQAYTARCRELGHRFALMIVDADHFKRVNDTHGHQTGD
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEHHHHHCCCCCCCCCHHH
AVLRHLAGVITGCVRSTDFIARFGGEEFVVLMPEPRDREEGRFVAEKIRLAVGHTPFPGV
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC
GHLTVSIGLAFCHGGGEPLATILERADKALYQAKEEGRDRVCVAPASHTST
CEEHEEEEEHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]