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The map label for this gene is 120612609

Identifier: 120612609

GI number: 120612609

Start: 4399631

End: 4402009

Strand: Direct

Name: 120612609

Synonym: Aave_3970

Alternate gene names: NA

Gene position: 4399631-4402009 (Clockwise)

Preceding gene: 120612607

Following gene: 120612610

Centisome position: 82.19

GC content: 70.95

Gene sequence:

>2379_bases
ATGGAGAGGGAATTCCTGTTGAAAAACGACACGCAGGGGAGCAGCCACGCCCCCGCTCCTGCCGACGCCGCCGCGCCCCA
CGCCCCGCCGGGCGCGCCATCCACCACCCCCGCGTTCCACGCCCATTCCGTCGAAGGCCAGCCGGAAAGCCGCTGGCAGA
CGCTGCCCGAGCACCTGCACGCCGTGGGCCGCATGGCCGGCGAATTCGCCGCCGTGTTCAATGCGCAGGAGCTCGCCCAG
GTCATGGGCTGGCTGCACGACCTGGGCAAGTACACCCTGCCCTTCCAGGCCCGGCTGCGCGGCAGCCCCCTGCGCGTGGA
CCATTCCACCTGGGGCGCGCGCATCGCCCAGCAGCGCCTGGGCGTGATGGGGCAATTGATGGCGTATGGCATCGCGGGCC
ACCACGCGGGCCTGGCCAACGGCCAGGGCGAAGGGGAGCGCACGGCACTGGCGGACCGGCTCACGGCCGCCGACCTGCCC
GCGCTGCACCCCGCCTGGGAAAAAGACATCCCCCTGCCCGCCCGGCTGGCGCTCCCCGCCGGCCTCAAGCTCTACGGCCA
GGACCGGCAGCAGGCCCTGGCGCGGCAGCCCTTCCAGATGGCCTTCCTGGCGCGCATGCTGTTTTCCTGCCTGGTGGACG
CGGACTTCATCGACACCGAGCGCTTCTACCTCCAGGCCAGGGGCGGACCGGACCACCGCTCCGCCGGCCCGGCCTGGCCG
GCCCTGCCGGCATTGCGCGCCCAGCTCGACACCCACCTGCGCACGCTCACGGCGCAATGCGATCCGGCCCGCGAGGTCAA
CCGCCTGCGGGCGGACATCCTGCGCCAGGTCCGCGAGCGCGCCGAGTGCACCCCGGGTCTCTTCTCGCTCACGGTGCCCA
CGGGCGGCGGCAAGACCCTGGCCTCGCTGGCCTTCGCGCTGGACCACGCCGTCCGCCACGGGCTGCGGCGCGTGATCTTC
GTCATTCCGTTCACCAGCATCGTCGAGCAGAACGCCGCCGTGTTCCGCAAGGCCCTCGGCCCGCTGGGCGATACGGCCGT
GCTGGAACACCACAGCGCATTCACCGAGCGCCAGCCGCCCCATGACGACCCGGAGAAATACCAATCCGCCGAGAAGCTGC
GCCTGGCCATGGAGAACTGGGACGCGCCCATCGTCGTCACCACGGCCGTGCAGTTCTTCGAAAGCCTCTTCGCCGCGCGG
CCCTCGCAGTGCCGCAAGCTGCACCACATCGCCGGCAGCGTGGTGGTGCTGGACGAGGCGCAGACCATGCCGCTCAAGCT
GCTCAAGCCCTGCGTCGCCGCCATCGACGAACTGGCGCGCAACTACCGCACCAGCATCGTGCTCTGCACCGCCACGCAGC
CCGTGCTGGAGGCACCCGCGTTCGACGGCGGGCTGACGGGCGTGCGCGAGCTGGCGCCCGAGCCCACGCGGCTCTTCCAG
CAACTGGAGCGGGTGCGCGTGCGCCACGTGGGCACGCTGGACGACGCGGCCCTGGCCGGCCACCTGCGGGCGCGCGAGCA
GGTGCTGTGCATCGTCAACAACCGCCGCCACGCGCGGGCCGTGTACGAAGCCATGGCCGACCTGCCCGGCGCGCGGCACC
TGACCACGCTGATGTGCGCCAGGCACCGCAGCGAGGTGCTGGACGAAGTGCGGCAGATGCTGGAGGCCGGCGAGCCCTGC
CGCGTCGTCAGCACCAGCCTGATCGAGGCGGACGTGGATGTGGACTTCCCCACGGTGCTGCGCGCCGAGGCGGGCCTGGA
TTCCATCGCCCAGGCGGCCGGCCGCTGCAACCGCGAAGGCGGCAGGCCCATCGACGCCAGCGAGGTGCTGGTGTTCTCCC
CCGCCAACGAGGACTGGGCGCCGCCCCCCGAATTGAAGCAATACGCCCAGGCGGCCCGCGAGGTGTTGCGCCAGTGCGCG
GACGACCCGCTGTCGCCCGGGGCCATCGCCCGCTATTTCGCGCTGTTGTACTGGCAAAAGGGCGGCGACCAGCTCGACGT
GCCCGACCTCATGGGCCTGCTCAAGACCCGCCGCCCGGACAGCCTGCCGATGGAAACCCTGGCGACCCGGTTCCGCATGA
TCGACAGCGTGCAGATGCCGGTCATCGTGCCGTATGACGACACGGCCCGGGAAACGCTGGAGCAGCTGCGGTTTGCCGAA
GGCAGCGTGGGGCTGGCGCGCAAGCTGCAGCCTTATGTGGTGCAGTTGCCGAGGCAGGGATTCGATGCGCTGTACCAGGC
GGGGGCGATCGCGCCGGTGCGGCCGGATAGATGGGGTGAGCAGTTCATGCAACTGGTGCATCCGGACATCTACAGCCAGC
GCTCCGGACTGCATTGGGACGATCCCACCTTCATCCGCAGCGAACGCCTCCACTGGTGA

Upstream 100 bases:

>100_bases
GCAGAAGCACAGGCTGCGGATGACAGGGGCTCATCCATTGCGCACAATGACCCCAGAAGCTCCGCACCCGGCTCCGGGCA
GAACGGAGCCCCGACAAGCC

Downstream 100 bases:

>100_bases
GCCTGCCGTGGGGCCAAAGATGAACACAAGCCGATCAAGGGAGGGGCCATGGCTTATGGAGTGAGATTACGCATCTGGGG
TGAGCGCGCCTGCTTCACGC

Product: metal dependent phosphohydrolase

Products: NA

Alternate protein names: Helicase; CRISPR-Associated Helicase Cas3 Family Protein Protein; CRISPR-Associated Helicase Cas3 Domain Protein; CRISPR-Associated HD Domain Protein; CRISPR-Associated Helicase Cas3 Domain-Containing Protein; ATP-Dependent RNA Helicase; CRISPR-Associated Helicase; DEAD/DEAH Box Helicase Domain-Containing Protein; Crispr-Associated Helicase Cas3 Domain Protein; Crispr-Associated Hd Domain Protein; Helicases; CRISPR-Associated Helicase Cas3 Core; CRISPR-Associated Helicase Cas3 Family; Helicase-Like Protein; Cas3 Family CRISPR-Associated Helicase; Helicases-Like Protein; CRISPR-Associated Helicase Cas3 Protein; CRISPR-Associated HD Domain-Containing Protein; ATP-Dependent RNA Helicase SrmB

Number of amino acids: Translated: 792; Mature: 792

Protein sequence:

>792_residues
MEREFLLKNDTQGSSHAPAPADAAAPHAPPGAPSTTPAFHAHSVEGQPESRWQTLPEHLHAVGRMAGEFAAVFNAQELAQ
VMGWLHDLGKYTLPFQARLRGSPLRVDHSTWGARIAQQRLGVMGQLMAYGIAGHHAGLANGQGEGERTALADRLTAADLP
ALHPAWEKDIPLPARLALPAGLKLYGQDRQQALARQPFQMAFLARMLFSCLVDADFIDTERFYLQARGGPDHRSAGPAWP
ALPALRAQLDTHLRTLTAQCDPAREVNRLRADILRQVRERAECTPGLFSLTVPTGGGKTLASLAFALDHAVRHGLRRVIF
VIPFTSIVEQNAAVFRKALGPLGDTAVLEHHSAFTERQPPHDDPEKYQSAEKLRLAMENWDAPIVVTTAVQFFESLFAAR
PSQCRKLHHIAGSVVVLDEAQTMPLKLLKPCVAAIDELARNYRTSIVLCTATQPVLEAPAFDGGLTGVRELAPEPTRLFQ
QLERVRVRHVGTLDDAALAGHLRAREQVLCIVNNRRHARAVYEAMADLPGARHLTTLMCARHRSEVLDEVRQMLEAGEPC
RVVSTSLIEADVDVDFPTVLRAEAGLDSIAQAAGRCNREGGRPIDASEVLVFSPANEDWAPPPELKQYAQAAREVLRQCA
DDPLSPGAIARYFALLYWQKGGDQLDVPDLMGLLKTRRPDSLPMETLATRFRMIDSVQMPVIVPYDDTARETLEQLRFAE
GSVGLARKLQPYVVQLPRQGFDALYQAGAIAPVRPDRWGEQFMQLVHPDIYSQRSGLHWDDPTFIRSERLHW

Sequences:

>Translated_792_residues
MEREFLLKNDTQGSSHAPAPADAAAPHAPPGAPSTTPAFHAHSVEGQPESRWQTLPEHLHAVGRMAGEFAAVFNAQELAQ
VMGWLHDLGKYTLPFQARLRGSPLRVDHSTWGARIAQQRLGVMGQLMAYGIAGHHAGLANGQGEGERTALADRLTAADLP
ALHPAWEKDIPLPARLALPAGLKLYGQDRQQALARQPFQMAFLARMLFSCLVDADFIDTERFYLQARGGPDHRSAGPAWP
ALPALRAQLDTHLRTLTAQCDPAREVNRLRADILRQVRERAECTPGLFSLTVPTGGGKTLASLAFALDHAVRHGLRRVIF
VIPFTSIVEQNAAVFRKALGPLGDTAVLEHHSAFTERQPPHDDPEKYQSAEKLRLAMENWDAPIVVTTAVQFFESLFAAR
PSQCRKLHHIAGSVVVLDEAQTMPLKLLKPCVAAIDELARNYRTSIVLCTATQPVLEAPAFDGGLTGVRELAPEPTRLFQ
QLERVRVRHVGTLDDAALAGHLRAREQVLCIVNNRRHARAVYEAMADLPGARHLTTLMCARHRSEVLDEVRQMLEAGEPC
RVVSTSLIEADVDVDFPTVLRAEAGLDSIAQAAGRCNREGGRPIDASEVLVFSPANEDWAPPPELKQYAQAAREVLRQCA
DDPLSPGAIARYFALLYWQKGGDQLDVPDLMGLLKTRRPDSLPMETLATRFRMIDSVQMPVIVPYDDTARETLEQLRFAE
GSVGLARKLQPYVVQLPRQGFDALYQAGAIAPVRPDRWGEQFMQLVHPDIYSQRSGLHWDDPTFIRSERLHW
>Mature_792_residues
MEREFLLKNDTQGSSHAPAPADAAAPHAPPGAPSTTPAFHAHSVEGQPESRWQTLPEHLHAVGRMAGEFAAVFNAQELAQ
VMGWLHDLGKYTLPFQARLRGSPLRVDHSTWGARIAQQRLGVMGQLMAYGIAGHHAGLANGQGEGERTALADRLTAADLP
ALHPAWEKDIPLPARLALPAGLKLYGQDRQQALARQPFQMAFLARMLFSCLVDADFIDTERFYLQARGGPDHRSAGPAWP
ALPALRAQLDTHLRTLTAQCDPAREVNRLRADILRQVRERAECTPGLFSLTVPTGGGKTLASLAFALDHAVRHGLRRVIF
VIPFTSIVEQNAAVFRKALGPLGDTAVLEHHSAFTERQPPHDDPEKYQSAEKLRLAMENWDAPIVVTTAVQFFESLFAAR
PSQCRKLHHIAGSVVVLDEAQTMPLKLLKPCVAAIDELARNYRTSIVLCTATQPVLEAPAFDGGLTGVRELAPEPTRLFQ
QLERVRVRHVGTLDDAALAGHLRAREQVLCIVNNRRHARAVYEAMADLPGARHLTTLMCARHRSEVLDEVRQMLEAGEPC
RVVSTSLIEADVDVDFPTVLRAEAGLDSIAQAAGRCNREGGRPIDASEVLVFSPANEDWAPPPELKQYAQAAREVLRQCA
DDPLSPGAIARYFALLYWQKGGDQLDVPDLMGLLKTRRPDSLPMETLATRFRMIDSVQMPVIVPYDDTARETLEQLRFAE
GSVGLARKLQPYVVQLPRQGFDALYQAGAIAPVRPDRWGEQFMQLVHPDIYSQRSGLHWDDPTFIRSERLHW

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 87511; Mature: 87511

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEREFLLKNDTQGSSHAPAPADAAAPHAPPGAPSTTPAFHAHSVEGQPESRWQTLPEHLH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
AVGRMAGEFAAVFNAQELAQVMGWLHDLGKYTLPFQARLRGSPLRVDHSTWGARIAQQRL
HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEECCHHHHHHHHHHHH
GVMGQLMAYGIAGHHAGLANGQGEGERTALADRLTAADLPALHPAWEKDIPLPARLALPA
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCC
GLKLYGQDRQQALARQPFQMAFLARMLFSCLVDADFIDTERFYLQARGGPDHRSAGPAWP
CCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCC
ALPALRAQLDTHLRTLTAQCDPAREVNRLRADILRQVRERAECTPGLFSLTVPTGGGKTL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHH
ASLAFALDHAVRHGLRRVIFVIPFTSIVEQNAAVFRKALGPLGDTAVLEHHSAFTERQPP
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
HDDPEKYQSAEKLRLAMENWDAPIVVTTAVQFFESLFAARPSQCRKLHHIAGSVVVLDEA
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCC
QTMPLKLLKPCVAAIDELARNYRTSIVLCTATQPVLEAPAFDGGLTGVRELAPEPTRLFQ
CCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHCCCCCCCCHHHHHHCCCHHHHHH
QLERVRVRHVGTLDDAALAGHLRAREQVLCIVNNRRHARAVYEAMADLPGARHLTTLMCA
HHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHH
RHRSEVLDEVRQMLEAGEPCRVVSTSLIEADVDVDFPTVLRAEAGLDSIAQAAGRCNREG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCC
GRPIDASEVLVFSPANEDWAPPPELKQYAQAAREVLRQCADDPLSPGAIARYFALLYWQK
CCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
GGDQLDVPDLMGLLKTRRPDSLPMETLATRFRMIDSVQMPVIVPYDDTARETLEQLRFAE
CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCC
GSVGLARKLQPYVVQLPRQGFDALYQAGAIAPVRPDRWGEQFMQLVHPDIYSQRSGLHWD
CCCCHHHHCCHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCCC
DPTFIRSERLHW
CCCHHCCCCCCC
>Mature Secondary Structure
MEREFLLKNDTQGSSHAPAPADAAAPHAPPGAPSTTPAFHAHSVEGQPESRWQTLPEHLH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
AVGRMAGEFAAVFNAQELAQVMGWLHDLGKYTLPFQARLRGSPLRVDHSTWGARIAQQRL
HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEECCHHHHHHHHHHHH
GVMGQLMAYGIAGHHAGLANGQGEGERTALADRLTAADLPALHPAWEKDIPLPARLALPA
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCC
GLKLYGQDRQQALARQPFQMAFLARMLFSCLVDADFIDTERFYLQARGGPDHRSAGPAWP
CCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCC
ALPALRAQLDTHLRTLTAQCDPAREVNRLRADILRQVRERAECTPGLFSLTVPTGGGKTL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHH
ASLAFALDHAVRHGLRRVIFVIPFTSIVEQNAAVFRKALGPLGDTAVLEHHSAFTERQPP
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
HDDPEKYQSAEKLRLAMENWDAPIVVTTAVQFFESLFAARPSQCRKLHHIAGSVVVLDEA
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCC
QTMPLKLLKPCVAAIDELARNYRTSIVLCTATQPVLEAPAFDGGLTGVRELAPEPTRLFQ
CCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHCCCCCCCCHHHHHHCCCHHHHHH
QLERVRVRHVGTLDDAALAGHLRAREQVLCIVNNRRHARAVYEAMADLPGARHLTTLMCA
HHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHH
RHRSEVLDEVRQMLEAGEPCRVVSTSLIEADVDVDFPTVLRAEAGLDSIAQAAGRCNREG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCC
GRPIDASEVLVFSPANEDWAPPPELKQYAQAAREVLRQCADDPLSPGAIARYFALLYWQK
CCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
GGDQLDVPDLMGLLKTRRPDSLPMETLATRFRMIDSVQMPVIVPYDDTARETLEQLRFAE
CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCC
GSVGLARKLQPYVVQLPRQGFDALYQAGAIAPVRPDRWGEQFMQLVHPDIYSQRSGLHWD
CCCCHHHHCCHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCCC
DPTFIRSERLHW
CCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA