Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is ytfM [C]

Identifier: 120612594

GI number: 120612594

Start: 4380712

End: 4382601

Strand: Direct

Name: ytfM [C]

Synonym: Aave_3955

Alternate gene names: 120612594

Gene position: 4380712-4382601 (Clockwise)

Preceding gene: 120612593

Following gene: 120612595

Centisome position: 81.84

GC content: 72.75

Gene sequence:

>1890_bases
ATGCCCAGCCTGACTACAGCGCCGGCCCGTTGGCCGGCGTTGCTGCTTCTGAGTCTCGTGGCGCTCCAGGGCTGCAGCAT
GCTGCCCGGCGCCCGCGACAAGGCGGACAGCGACGACAACACCGCCACCATCGCCTCCGATAACGGGGAAGCCGCAAGCG
GCGCAGATGCCTTCACGCTCGACGTGCGAGGCCCCGACGCCGTGCGCGAACTGCTCGAGCGGCACATGGAACTGCAGCGC
TTCCGCAAGCTGCCCGACCTGCAGGCCAGCGAACTCTCGCGCCTGCTCGGCGCGGCCGACGCCAATGCCCGCGAGCTGCT
GGGTACCATGGGCTACTTCAGTCCCACCCTCACCATCGCCCTGGAGGAAACACCCGGCGGCCCCGCGCCCCGGTCCATCA
CCGTGAACGTGGAGCCCGGCCCGCGCACCCTGGTCGCCGCGACCGACATCGCCTTCACCGGCCCCGAGGCCGAATCGCCC
GGCTTCGCGCGCCGCAAGGAGCGCATCCAGCGCTCCTGGTCGCTGCAGCCCGGCCAGCCCTTCACGCAGGACGCCTGGGA
CGGCGCCAAGGCCGGCGGCCTGCGCCAGCTGCAGGTCCGCCGCTACCCCACGGCGCGCATCGACGCCAGCCGCGCCGAGA
TCGACGCCGACCGCAGCGAGGCCAGACTCGGCGTCACCTACGCCCCGGGCCCGCCCTACCGCTTCGGCGCGCTGCGCGTG
CAGGGTGCTCAGCGCTACGACCCCGACGGCGCGCGCCGCATCGCGCGCCTGCCCACGGGCTCGGACTACTCCGAGAAGGA
ACTGCTGGACGCGCAGGCGCGCCTGGCCAGCAGCGGCTACTACGACGCGGTGTTCCTCGCCCTCGACACCGACGGCACCG
ACCCGCAGGCCGCGCCCGTCACCGCGCAGGTGCGCGAGGCGCCGCTGCAGAAGGTGGTGTTCGGCGTCGGCATCTCCACC
GACACCGGCGCGCGCCTGAGCGTGGACCATATCCACAACCGCCTGCCCGGCATCGGCTGGCGCGCGGTGAGCAAGGTCGC
CATCGACCAGAAGACGCGCCTGCTCTCCACCGAATGGACGGCCCTGCCCGAGGAGAGCGGCTGGCGCTGGTTCGGCGGCG
CGCAGGTGCAGCGCGAGGAAACCGGCAGCTACGACACCGACAGCGTGCGCCTGCGCGGCGGCCGCACCAAAAGCACCGGG
CATATCGACCGCAGCTACTTCCTGCAGTACGACGACTCCAAGAGCCGCGGCCCGTCGGCGCCACCCTCCAGCAACGCCAT
CAGCGCCAACTACGGCTGGACGGGCCGCTACTTCAACAACGACACCTCGCCCACGCGCGGCTACGGCCTCGCGGCCGAAC
TGGGCGTGGGCACGACGCTGCGTCCCGAGCGCGAGCCGTTCGTGCGCACGCGCGTGCGCTGGCAATCCTTCGTGCCCCTG
GGCCGCGTGGACATGGGCGAGGGCGTCATCCGTTCGAGCCGGCTCTCGCTGCGCGCTGAAGGCGGCGCGGTGATCGCCCG
CCAGGGCGCGGACATCCCGGTCACCCAGCTGTTCCTCACGGGCGGCGACACCACCGTGCGCGGCTACGGCTACCGCAAGA
TCGGCGCGCGCACCGAGAACGACACCCTCTACGGCGGCCGCTACCTCGCGGTGGGCAGCGTGGAATGGCAGCGCCCCATC
ACCCTGCGCGGCAACCGCACCGACTTCGAGAGCGCCGTGTTCGTGGACGCCGGCGCCGTGGCCGACCGCTGGGGCGACTT
CGATCCGCGCGTGGGCGTGGGTGCCGGCCTGCGCTGGCGCAGCCCCGTGGGCCCGCTGCAGGCCGACGTGGCCTACGGCG
TGCAGGCCAAGGCCCTGCGGCTGCACCTGCGCCTGGGTTTCAGCTTCTGA

Upstream 100 bases:

>100_bases
AAAGTATCGGCCTCATCCTACAGTTGCTGGGGGGGCGGATGTATCCTTTGTCCCTCAAAGGCCTCGAGGAGACCATGCGG
CTGCTGTCAAAATAAACTTC

Downstream 100 bases:

>100_bases
CCGGCTCCGGCCGCTTTTATCCGCGCGATCCGATGGCCACGCACCAGACCCCGAACCCCTATGCCGCCGCCGCGGCCCCG
CCACCCCGCGCACCCCGGCG

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 629; Mature: 628

Protein sequence:

>629_residues
MPSLTTAPARWPALLLLSLVALQGCSMLPGARDKADSDDNTATIASDNGEAASGADAFTLDVRGPDAVRELLERHMELQR
FRKLPDLQASELSRLLGAADANARELLGTMGYFSPTLTIALEETPGGPAPRSITVNVEPGPRTLVAATDIAFTGPEAESP
GFARRKERIQRSWSLQPGQPFTQDAWDGAKAGGLRQLQVRRYPTARIDASRAEIDADRSEARLGVTYAPGPPYRFGALRV
QGAQRYDPDGARRIARLPTGSDYSEKELLDAQARLASSGYYDAVFLALDTDGTDPQAAPVTAQVREAPLQKVVFGVGIST
DTGARLSVDHIHNRLPGIGWRAVSKVAIDQKTRLLSTEWTALPEESGWRWFGGAQVQREETGSYDTDSVRLRGGRTKSTG
HIDRSYFLQYDDSKSRGPSAPPSSNAISANYGWTGRYFNNDTSPTRGYGLAAELGVGTTLRPEREPFVRTRVRWQSFVPL
GRVDMGEGVIRSSRLSLRAEGGAVIARQGADIPVTQLFLTGGDTTVRGYGYRKIGARTENDTLYGGRYLAVGSVEWQRPI
TLRGNRTDFESAVFVDAGAVADRWGDFDPRVGVGAGLRWRSPVGPLQADVAYGVQAKALRLHLRLGFSF

Sequences:

>Translated_629_residues
MPSLTTAPARWPALLLLSLVALQGCSMLPGARDKADSDDNTATIASDNGEAASGADAFTLDVRGPDAVRELLERHMELQR
FRKLPDLQASELSRLLGAADANARELLGTMGYFSPTLTIALEETPGGPAPRSITVNVEPGPRTLVAATDIAFTGPEAESP
GFARRKERIQRSWSLQPGQPFTQDAWDGAKAGGLRQLQVRRYPTARIDASRAEIDADRSEARLGVTYAPGPPYRFGALRV
QGAQRYDPDGARRIARLPTGSDYSEKELLDAQARLASSGYYDAVFLALDTDGTDPQAAPVTAQVREAPLQKVVFGVGIST
DTGARLSVDHIHNRLPGIGWRAVSKVAIDQKTRLLSTEWTALPEESGWRWFGGAQVQREETGSYDTDSVRLRGGRTKSTG
HIDRSYFLQYDDSKSRGPSAPPSSNAISANYGWTGRYFNNDTSPTRGYGLAAELGVGTTLRPEREPFVRTRVRWQSFVPL
GRVDMGEGVIRSSRLSLRAEGGAVIARQGADIPVTQLFLTGGDTTVRGYGYRKIGARTENDTLYGGRYLAVGSVEWQRPI
TLRGNRTDFESAVFVDAGAVADRWGDFDPRVGVGAGLRWRSPVGPLQADVAYGVQAKALRLHLRLGFSF
>Mature_628_residues
PSLTTAPARWPALLLLSLVALQGCSMLPGARDKADSDDNTATIASDNGEAASGADAFTLDVRGPDAVRELLERHMELQRF
RKLPDLQASELSRLLGAADANARELLGTMGYFSPTLTIALEETPGGPAPRSITVNVEPGPRTLVAATDIAFTGPEAESPG
FARRKERIQRSWSLQPGQPFTQDAWDGAKAGGLRQLQVRRYPTARIDASRAEIDADRSEARLGVTYAPGPPYRFGALRVQ
GAQRYDPDGARRIARLPTGSDYSEKELLDAQARLASSGYYDAVFLALDTDGTDPQAAPVTAQVREAPLQKVVFGVGISTD
TGARLSVDHIHNRLPGIGWRAVSKVAIDQKTRLLSTEWTALPEESGWRWFGGAQVQREETGSYDTDSVRLRGGRTKSTGH
IDRSYFLQYDDSKSRGPSAPPSSNAISANYGWTGRYFNNDTSPTRGYGLAAELGVGTTLRPEREPFVRTRVRWQSFVPLG
RVDMGEGVIRSSRLSLRAEGGAVIARQGADIPVTQLFLTGGDTTVRGYGYRKIGARTENDTLYGGRYLAVGSVEWQRPIT
LRGNRTDFESAVFVDAGAVADRWGDFDPRVGVGAGLRWRSPVGPLQADVAYGVQAKALRLHLRLGFSF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ytfM [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=120, Percent_Identity=40, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184 [H]

Pfam domain/function: PF01103 Bac_surface_Ag [H]

EC number: NA

Molecular weight: Translated: 68268; Mature: 68137

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSLTTAPARWPALLLLSLVALQGCSMLPGARDKADSDDNTATIASDNGEAASGADAFTL
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEE
DVRGPDAVRELLERHMELQRFRKLPDLQASELSRLLGAADANARELLGTMGYFSPTLTIA
ECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEE
LEETPGGPAPRSITVNVEPGPRTLVAATDIAFTGPEAESPGFARRKERIQRSWSLQPGQP
EECCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC
FTQDAWDGAKAGGLRQLQVRRYPTARIDASRAEIDADRSEARLGVTYAPGPPYRFGALRV
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCEEEEEEE
QGAQRYDPDGARRIARLPTGSDYSEKELLDAQARLASSGYYDAVFLALDTDGTDPQAAPV
CCCCCCCCCHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC
TAQVREAPLQKVVFGVGISTDTGARLSVDHIHNRLPGIGWRAVSKVAIDQKTRLLSTEWT
HHHHHHCCHHHHHEECCCCCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCC
ALPEESGWRWFGGAQVQREETGSYDTDSVRLRGGRTKSTGHIDRSYFLQYDDSKSRGPSA
CCCCCCCCEEECCCEEEHHCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC
PPSSNAISANYGWTGRYFNNDTSPTRGYGLAAELGVGTTLRPEREPFVRTRVRWQSFVPL
CCCCCEEECCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
GRVDMGEGVIRSSRLSLRAEGGAVIARQGADIPVTQLFLTGGDTTVRGYGYRKIGARTEN
CCCCCCCCHHCCCCEEEEECCCEEEEECCCCCCEEEEEEECCCEEEECCCEEECCCCCCC
DTLYGGRYLAVGSVEWQRPITLRGNRTDFESAVFVDAGAVADRWGDFDPRVGVGAGLRWR
CEEECCEEEEEECCCCCCCEEEECCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCEEC
SPVGPLQADVAYGVQAKALRLHLRLGFSF
CCCCCCHHHHHCCCEEEEEEEEEEECCCC
>Mature Secondary Structure 
PSLTTAPARWPALLLLSLVALQGCSMLPGARDKADSDDNTATIASDNGEAASGADAFTL
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEE
DVRGPDAVRELLERHMELQRFRKLPDLQASELSRLLGAADANARELLGTMGYFSPTLTIA
ECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEE
LEETPGGPAPRSITVNVEPGPRTLVAATDIAFTGPEAESPGFARRKERIQRSWSLQPGQP
EECCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC
FTQDAWDGAKAGGLRQLQVRRYPTARIDASRAEIDADRSEARLGVTYAPGPPYRFGALRV
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCEEEEEEE
QGAQRYDPDGARRIARLPTGSDYSEKELLDAQARLASSGYYDAVFLALDTDGTDPQAAPV
CCCCCCCCCHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC
TAQVREAPLQKVVFGVGISTDTGARLSVDHIHNRLPGIGWRAVSKVAIDQKTRLLSTEWT
HHHHHHCCHHHHHEECCCCCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCC
ALPEESGWRWFGGAQVQREETGSYDTDSVRLRGGRTKSTGHIDRSYFLQYDDSKSRGPSA
CCCCCCCCEEECCCEEEHHCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC
PPSSNAISANYGWTGRYFNNDTSPTRGYGLAAELGVGTTLRPEREPFVRTRVRWQSFVPL
CCCCCEEECCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
GRVDMGEGVIRSSRLSLRAEGGAVIARQGADIPVTQLFLTGGDTTVRGYGYRKIGARTEN
CCCCCCCCHHCCCCEEEEECCCEEEEECCCCCCEEEEEEECCCEEEECCCEEECCCCCCC
DTLYGGRYLAVGSVEWQRPITLRGNRTDFESAVFVDAGAVADRWGDFDPRVGVGAGLRWR
CEEECCEEEEEECCCCCCCEEEECCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCEEC
SPVGPLQADVAYGVQAKALRLHLRLGFSF
CCCCCCHHHHHCCCEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]