Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is rhtB [H]
Identifier: 120612554
GI number: 120612554
Start: 4337190
End: 4337828
Strand: Reverse
Name: rhtB [H]
Synonym: Aave_3915
Alternate gene names: 120612554
Gene position: 4337828-4337190 (Counterclockwise)
Preceding gene: 120612561
Following gene: 120612553
Centisome position: 81.04
GC content: 72.93
Gene sequence:
>639_bases ATGGACTTCCACACCTGGCTCGCCTTCGCCGCCGCCGCCTGCCTCATCGCCCTCTCGCCCGGCTCGGGGGCCGTGCTGTC CATGAGCCACGGGCTGGCCTACGGCGTGCGCCGCACGGGCGCGACCATCCTCGGCCTGCAGCTGGGCCTGCTGCTCGTGC TGGTGATCGCCGGTGCCGGCGTGGGCTCGCTGCTGCTGGCGTCCGAGACCGCGTTCAGCGCGGTGAAGGTGATGGGCGCG TGCTACCTGATCTATCTCGGGTTCACCCAGTGGCGCGCGGGCGGCGCCTCGGTGTTCGGCGACGAAGGGGCCGCCCCCGC CGCCTCCTGGCGCCGCCGCTGCGCCGCCGGCTTCCTCACCAACGCCACCAACCCCAAGGGCATCATCTTCATGGTCGCGG TGCTGCCGCAGTTCCTGACGGAGTCGCGGCCCCTGTGGACGCAACTGCTCGCGCTGGGCGCCACCATGGTCGTGGTGGAC CTCACCGTCATGCACGGCTATGCCGCCAGCGCCAGCGCGCTGCGGCGGCTGCTGCGCAGCCCCCGGGCGGTACGCAACCA GAACCGCGTCTTCGGCGGCCTGCTCATGGCCGTGGGCGCCGGGCTGTTCTTCGTGCGACGCGGCGGGCAGCACGCCTGA
Upstream 100 bases:
>100_bases AGAGGGGGGCGCCGGCGCATTGTGCCCGTTAACATGCTCCACCGTGTCGGCGGCCATGCCGGCGCGGCATCCCCTTTCCA TTTTCTCCTGCTGCCTTCCC
Downstream 100 bases:
>100_bases CGGCGCCGAATTGGCCGAAGACGGTTTGCGCCGTCACGCCGTGGCGCTACCATCGGCGTCCCGTCGAACGAGTTCGCCAT CGAGGAGTCGCACATGCCCG
Product: lysine exporter protein LysE/YggA
Products: homoserine lactone [Periplasm]; Proton [Cytoplasm]; homoserine [Periplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MDFHTWLAFAAAACLIALSPGSGAVLSMSHGLAYGVRRTGATILGLQLGLLLVLVIAGAGVGSLLLASETAFSAVKVMGA CYLIYLGFTQWRAGGASVFGDEGAAPAASWRRRCAAGFLTNATNPKGIIFMVAVLPQFLTESRPLWTQLLALGATMVVVD LTVMHGYAASASALRRLLRSPRAVRNQNRVFGGLLMAVGAGLFFVRRGGQHA
Sequences:
>Translated_212_residues MDFHTWLAFAAAACLIALSPGSGAVLSMSHGLAYGVRRTGATILGLQLGLLLVLVIAGAGVGSLLLASETAFSAVKVMGA CYLIYLGFTQWRAGGASVFGDEGAAPAASWRRRCAAGFLTNATNPKGIIFMVAVLPQFLTESRPLWTQLLALGATMVVVD LTVMHGYAASASALRRLLRSPRAVRNQNRVFGGLLMAVGAGLFFVRRGGQHA >Mature_212_residues MDFHTWLAFAAAACLIALSPGSGAVLSMSHGLAYGVRRTGATILGLQLGLLLVLVIAGAGVGSLLLASETAFSAVKVMGA CYLIYLGFTQWRAGGASVFGDEGAAPAASWRRRCAAGFLTNATNPKGIIFMVAVLPQFLTESRPLWTQLLALGATMVVVD LTVMHGYAASASALRRLLRSPRAVRNQNRVFGGLLMAVGAGLFFVRRGGQHA
Specific function: Conducts the efflux of homoserine and homoserine lactone [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the rht family [H]
Homologues:
Organism=Escherichia coli, GI48994979, Length=200, Percent_Identity=40, Blast_Score=147, Evalue=6e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004778 - InterPro: IPR001123 [H]
Pfam domain/function: PF01810 LysE [H]
EC number: NA
Molecular weight: Translated: 22137; Mature: 22137
Theoretical pI: Translated: 11.53; Mature: 11.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFHTWLAFAAAACLIALSPGSGAVLSMSHGLAYGVRRTGATILGLQLGLLLVLVIAGAG CCHHHHHHHHHHHHHHEECCCCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCC VGSLLLASETAFSAVKVMGACYLIYLGFTQWRAGGASVFGDEGAAPAASWRRRCAAGFLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC NATNPKGIIFMVAVLPQFLTESRPLWTQLLALGATMVVVDLTVMHGYAASASALRRLLRS CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC PRAVRNQNRVFGGLLMAVGAGLFFVRRGGQHA CHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MDFHTWLAFAAAACLIALSPGSGAVLSMSHGLAYGVRRTGATILGLQLGLLLVLVIAGAG CCHHHHHHHHHHHHHHEECCCCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCC VGSLLLASETAFSAVKVMGACYLIYLGFTQWRAGGASVFGDEGAAPAASWRRRCAAGFLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC NATNPKGIIFMVAVLPQFLTESRPLWTQLLALGATMVVVDLTVMHGYAASASALRRLLRS CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC PRAVRNQNRVFGGLLMAVGAGLFFVRRGGQHA CHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; homoserine [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + homoserine lactone [Cytoplasm] = Proton [Cytoplasm] + homoserine lactone [Periplasm] Proton [Periplasm] + homoserine [Cytoplasm] = Proton [Cytoplasm] + homoserine [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]