Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ctaC [H]
Identifier: 120612546
GI number: 120612546
Start: 4330321
End: 4331493
Strand: Reverse
Name: ctaC [H]
Synonym: Aave_3907
Alternate gene names: 120612546
Gene position: 4331493-4330321 (Counterclockwise)
Preceding gene: 120612547
Following gene: 120612545
Centisome position: 80.92
GC content: 65.98
Gene sequence:
>1173_bases ATGAAGAAAAGCATTTCCAACCCGCTGCCTTCGTTGCTGCTGCTGTGCGGAGCATGGGTGGGGGGCGCCGCGCAGGCGGT GCAGGACCTTCCCGGCGGCCCGGCCGTGCGCCAGCTCAATCTCGCGCCCCCGGTCACGCGCATCGCCGAGGAGCAGCATT TCCTGCACTGGATGATGCTCGTCATCTGCACGCTGATCTTCGTGGGCGTGTTCTCGGTGATGTTCTATTCCATCTGGAAG CACCGCAAGTCGCAGGGCGCCAAGCCCGCCAACTTCCACGAGTCCGTCACGGTCGAGGTGATCTGGACCATCGTTCCCTT CATCATCGTGATCCTCATGGCCCTGCCGGCCACCAAGGTGCTCGTCGCCCAGAAGGACACCACCAACGCCGACCTCACGG TGAAGGTCACCGGCTACCAGTGGAAGTGGGGCTACGACTACATCAACGGCGAGGGCCAGGGCCTGGCCTACATCTCCACG CTCGACAACAGCCACCGCCGGCTCTCCGACAGCGGCAGGGTCGCCGACGCGCCGCCGGACTACCTGCTCAAGGTGGACAA CCCCCTGGTCGTGCCCGTTGGCAAGAAGGTGCGCGTGATCACCACCGCCAACGACGTCATCCATTCGTTCATGGTGCCGG CCTTCGGCATCAAGCAGGACGCGATCCCCGGCTTCGTGCGCGACACCTGGTTCCGCGCCGACAAGGTCGGCGACTACTAC GGGCAGTGCGCCGAGCTCTGCGGCAAGGAGCACGCCTACATGCCCATCCACGTGAAGGTGCTCTCCGCGGCCGACTACAC CCAGTGGGTCGCCGCCGAGAAGAAGAAGGCCGCCGCCAAGGCCGACGATCCCAACAAGGTCTGGACGCTGACCGACATCG TGGCCCGCGGCGAGAAGGTCTATGCCGCCAACTGCGCCGCCTGCCACCAGCCCAACGGCAAGGGCGCCGGCCCCATCAAG CCCCTCGACGGCTCGGCCATCGTGAAGGACGAGGACCACACCAGGCAGATCCAGATCGTGCTCAAGGGCGCGGCAGGCGG CGCCATGCCCTCCTGGGCGCAACTGAGCGACACCGACCTCGCGGCCGTGGTCAGCTACACGAAGAACGCCTGGTCCAACA AGACCGGCCAGATCGTCCAGCCCGCGGAAATCGTGGCCCAGCGCGGCAAGTGA
Upstream 100 bases:
>100_bases TGCGCCCCGGCTGTCGGAATCCGCATGCCCCCGGGCGCCGCCCGACCCCACGCGGGCGCGCCCTGGGGAAAGGGTTAATT GAGGCTGAGAAGTGAGAACT
Downstream 100 bases:
>100_bases GACAGCTAAAGCATTGAGGAACCCGACATGAGCGCAGTTCTCGACCCCACCGGGCATGCCGCCGGCCATGACCACGGCGG CCACGACCACGACCATGCAC
Product: cytochrome c oxidase subunit II
Products: NA
Alternate protein names: Cytochrome aa3 subunit 2; Cytochrome c oxidase polypeptide II; Oxidase aa(3) subunit 2 [H]
Number of amino acids: Translated: 390; Mature: 390
Protein sequence:
>390_residues MKKSISNPLPSLLLLCGAWVGGAAQAVQDLPGGPAVRQLNLAPPVTRIAEEQHFLHWMMLVICTLIFVGVFSVMFYSIWK HRKSQGAKPANFHESVTVEVIWTIVPFIIVILMALPATKVLVAQKDTTNADLTVKVTGYQWKWGYDYINGEGQGLAYIST LDNSHRRLSDSGRVADAPPDYLLKVDNPLVVPVGKKVRVITTANDVIHSFMVPAFGIKQDAIPGFVRDTWFRADKVGDYY GQCAELCGKEHAYMPIHVKVLSAADYTQWVAAEKKKAAAKADDPNKVWTLTDIVARGEKVYAANCAACHQPNGKGAGPIK PLDGSAIVKDEDHTRQIQIVLKGAAGGAMPSWAQLSDTDLAAVVSYTKNAWSNKTGQIVQPAEIVAQRGK
Sequences:
>Translated_390_residues MKKSISNPLPSLLLLCGAWVGGAAQAVQDLPGGPAVRQLNLAPPVTRIAEEQHFLHWMMLVICTLIFVGVFSVMFYSIWK HRKSQGAKPANFHESVTVEVIWTIVPFIIVILMALPATKVLVAQKDTTNADLTVKVTGYQWKWGYDYINGEGQGLAYIST LDNSHRRLSDSGRVADAPPDYLLKVDNPLVVPVGKKVRVITTANDVIHSFMVPAFGIKQDAIPGFVRDTWFRADKVGDYY GQCAELCGKEHAYMPIHVKVLSAADYTQWVAAEKKKAAAKADDPNKVWTLTDIVARGEKVYAANCAACHQPNGKGAGPIK PLDGSAIVKDEDHTRQIQIVLKGAAGGAMPSWAQLSDTDLAAVVSYTKNAWSNKTGQIVQPAEIVAQRGK >Mature_390_residues MKKSISNPLPSLLLLCGAWVGGAAQAVQDLPGGPAVRQLNLAPPVTRIAEEQHFLHWMMLVICTLIFVGVFSVMFYSIWK HRKSQGAKPANFHESVTVEVIWTIVPFIIVILMALPATKVLVAQKDTTNADLTVKVTGYQWKWGYDYINGEGQGLAYIST LDNSHRRLSDSGRVADAPPDYLLKVDNPLVVPVGKKVRVITTANDVIHSFMVPAFGIKQDAIPGFVRDTWFRADKVGDYY GQCAELCGKEHAYMPIHVKVLSAADYTQWVAAEKKKAAAKADDPNKVWTLTDIVARGEKVYAANCAACHQPNGKGAGPIK PLDGSAIVKDEDHTRQIQIVLKGAAGGAMPSWAQLSDTDLAAVVSYTKNAWSNKTGQIVQPAEIVAQRGK
Specific function: Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) [H]
COG id: COG1622
COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytochrome c oxidase subunit 2 family [H]
Homologues:
Organism=Homo sapiens, GI251831110, Length=171, Percent_Identity=37.4269005847953, Blast_Score=129, Evalue=4e-30, Organism=Saccharomyces cerevisiae, GI6226540, Length=209, Percent_Identity=33.9712918660287, Blast_Score=130, Evalue=3e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001505 - InterPro: IPR008972 - InterPro: IPR014222 - InterPro: IPR015964 - InterPro: IPR002429 - InterPro: IPR011759 [H]
Pfam domain/function: PF00116 COX2; PF02790 COX2_TM [H]
EC number: =1.9.3.1 [H]
Molecular weight: Translated: 42484; Mature: 42484
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: PS00078 COX2 ; PS50999 COX2_TM ; PS50857 COX2_CUA ; PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSISNPLPSLLLLCGAWVGGAAQAVQDLPGGPAVRQLNLAPPVTRIAEEQHFLHWMML CCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH VICTLIFVGVFSVMFYSIWKHRKSQGAKPANFHESVTVEVIWTIVPFIIVILMALPATKV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE LVAQKDTTNADLTVKVTGYQWKWGYDYINGEGQGLAYISTLDNSHRRLSDSGRVADAPPD EEEECCCCCCEEEEEEECEEEEECCCEECCCCCCEEEEEECCCCHHHCCCCCCCCCCCCC YLLKVDNPLVVPVGKKVRVITTANDVIHSFMVPAFGIKQDAIPGFVRDTWFRADKVGDYY CEEEECCCEEEECCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH GQCAELCGKEHAYMPIHVKVLSAADYTQWVAAEKKKAAAKADDPNKVWTLTDIVARGEKV HHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHCCCEE YAANCAACHQPNGKGAGPIKPLDGSAIVKDEDHTRQIQIVLKGAAGGAMPSWAQLSDTDL EEECCHHHCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCHH AAVVSYTKNAWSNKTGQIVQPAEIVAQRGK HHHHHHHHHHCCCCCCCEECHHHHHHCCCC >Mature Secondary Structure MKKSISNPLPSLLLLCGAWVGGAAQAVQDLPGGPAVRQLNLAPPVTRIAEEQHFLHWMML CCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH VICTLIFVGVFSVMFYSIWKHRKSQGAKPANFHESVTVEVIWTIVPFIIVILMALPATKV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE LVAQKDTTNADLTVKVTGYQWKWGYDYINGEGQGLAYISTLDNSHRRLSDSGRVADAPPD EEEECCCCCCEEEEEEECEEEEECCCEECCCCCCEEEEEECCCCHHHCCCCCCCCCCCCC YLLKVDNPLVVPVGKKVRVITTANDVIHSFMVPAFGIKQDAIPGFVRDTWFRADKVGDYY CEEEECCCEEEECCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH GQCAELCGKEHAYMPIHVKVLSAADYTQWVAAEKKKAAAKADDPNKVWTLTDIVARGEKV HHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHCCCEE YAANCAACHQPNGKGAGPIKPLDGSAIVKDEDHTRQIQIVLKGAAGGAMPSWAQLSDTDL EEECCHHHCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCHH AAVVSYTKNAWSNKTGQIVQPAEIVAQRGK HHHHHHHHHHCCCCCCCEECHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1648008 [H]