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The map label for this gene is kdgT [H]

Identifier: 120612518

GI number: 120612518

Start: 4300838

End: 4301905

Strand: Direct

Name: kdgT [H]

Synonym: Aave_3877

Alternate gene names: 120612518

Gene position: 4300838-4301905 (Clockwise)

Preceding gene: 120612515

Following gene: 120612519

Centisome position: 80.35

GC content: 66.85

Gene sequence:

>1068_bases
ATGAACAGCGCTATTTCCGCTGGCAAAGCGCACCGTTCCCAAGGCGCCCCGCAATATGCTCCCGCTGAGCGGCCAGCTCA
ATACATCACCATGAAAATCAAATCCACCATCGAAAAGATACCGGGCGGCATGATGCTCGTCCCGCTCCTGCTGGGAGCCG
CGCTCCACACAGTACGGCCGGACACCGGCAAGTACTACGGCTCGTTCACGCAGGGGCTGATCTCCGGCGTGGTGCCCATA
CTGGCCGTCTGGATGTTCTGCCTCGGGGCGTCCATCCATCTGCGGGCCACGGGTGCCCTGCTGCGCAAATCAGGGGCGCT
GGTCGGCGCCAAGATCGGCACGGCCTGGCTGGCTGCGTGGCTGCTCCCCCTGTGGATTCCTGTGGACGGCCTGCGCACCG
GATTCTTCGCCGGGCTGTCGGTGCTGGCCGTCGTGGCGGCGCTGGACATGACCAACGGGGGCCTCTATGCGTCGATCATG
GAAGAGCACGGAACCCGCGAAGAAGCGGGCGTCTCGGTGCTGATCGGATTGGAATCGGGGCCGCTGGTGACCATGCTCAT
CCTCGGCTCCACCGGCCTCGCCGCATTCGAGCCCCGCCTGCTGGTCGGCGTGGCCATTCCCTTCATCGCCGGCTTCGTGC
TCGGCAATCTCGATCCCGAACTGCGAAGCTTCTTCTCTCCTGCCACGCGCGTCCTGATTCCCTTCTTCGCCTTCGCACTC
GGCAACACGATCGACCTGCGCGTGGTGGTGGAAGCCGGGATGCCGGGCATCGCGATGGCGCTGGCCGTCATGGCCGTCTC
GGGCACGGCCCTCGTTCTGGCGGACATCTTCATCGGCGGCGGACGCGGCACTGCGGGCATCGCCGCGTCCAGCACCGCGG
GCGCGGCAGTGGCCACGCCGCACCTCGTCGCCCAGGCAGCACCGCAGTTCGCTACCGTAGCGCCATCCGCGACGGCGCTG
GTCGCGGCATGCGTCGTGATCACCGCGGTGCTGGTTCCGCTCGCCTCCACATGGTGGGCTTCCCGGGTGGCGCCCCGGAT
TCACGCCATGGATGGGCAACCATCATGA

Upstream 100 bases:

>100_bases
CGGCGGTGACCAGGACGGTTTTTCCTTGCAAACGTCGCATCGAAGCTCCTTCCAGAAAAGCCGAGTCAATCAGGCAAAAA
ACAATTAATCCACTCCATTA

Downstream 100 bases:

>100_bases
AATCAGAACGATAAAGCAAAAAATCCATTTAGGCGTTCCATGCCGATACAGGGGATGCCATCGATCTACGCGACCCTGCC
CTGCCCCACCGACACGCACT

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease [H]

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MNSAISAGKAHRSQGAPQYAPAERPAQYITMKIKSTIEKIPGGMMLVPLLLGAALHTVRPDTGKYYGSFTQGLISGVVPI
LAVWMFCLGASIHLRATGALLRKSGALVGAKIGTAWLAAWLLPLWIPVDGLRTGFFAGLSVLAVVAALDMTNGGLYASIM
EEHGTREEAGVSVLIGLESGPLVTMLILGSTGLAAFEPRLLVGVAIPFIAGFVLGNLDPELRSFFSPATRVLIPFFAFAL
GNTIDLRVVVEAGMPGIAMALAVMAVSGTALVLADIFIGGGRGTAGIAASSTAGAAVATPHLVAQAAPQFATVAPSATAL
VAACVVITAVLVPLASTWWASRVAPRIHAMDGQPS

Sequences:

>Translated_355_residues
MNSAISAGKAHRSQGAPQYAPAERPAQYITMKIKSTIEKIPGGMMLVPLLLGAALHTVRPDTGKYYGSFTQGLISGVVPI
LAVWMFCLGASIHLRATGALLRKSGALVGAKIGTAWLAAWLLPLWIPVDGLRTGFFAGLSVLAVVAALDMTNGGLYASIM
EEHGTREEAGVSVLIGLESGPLVTMLILGSTGLAAFEPRLLVGVAIPFIAGFVLGNLDPELRSFFSPATRVLIPFFAFAL
GNTIDLRVVVEAGMPGIAMALAVMAVSGTALVLADIFIGGGRGTAGIAASSTAGAAVATPHLVAQAAPQFATVAPSATAL
VAACVVITAVLVPLASTWWASRVAPRIHAMDGQPS
>Mature_355_residues
MNSAISAGKAHRSQGAPQYAPAERPAQYITMKIKSTIEKIPGGMMLVPLLLGAALHTVRPDTGKYYGSFTQGLISGVVPI
LAVWMFCLGASIHLRATGALLRKSGALVGAKIGTAWLAAWLLPLWIPVDGLRTGFFAGLSVLAVVAALDMTNGGLYASIM
EEHGTREEAGVSVLIGLESGPLVTMLILGSTGLAAFEPRLLVGVAIPFIAGFVLGNLDPELRSFFSPATRVLIPFFAFAL
GNTIDLRVVVEAGMPGIAMALAVMAVSGTALVLADIFIGGGRGTAGIAASSTAGAAVATPHLVAQAAPQFATVAPSATAL
VAACVVITAVLVPLASTWWASRVAPRIHAMDGQPS

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=316, Percent_Identity=62.3417721518987, Blast_Score=362, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- InterPro:   IPR018395
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 36372; Mature: 36372

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSAISAGKAHRSQGAPQYAPAERPAQYITMKIKSTIEKIPGGMMLVPLLLGAALHTVRP
CCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
DTGKYYGSFTQGLISGVVPILAVWMFCLGASIHLRATGALLRKSGALVGAKIGTAWLAAW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCEEEHHHHHHHHHHH
LLPLWIPVDGLRTGFFAGLSVLAVVAALDMTNGGLYASIMEEHGTREEAGVSVLIGLESG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEEECCC
PLVTMLILGSTGLAAFEPRLLVGVAIPFIAGFVLGNLDPELRSFFSPATRVLIPFFAFAL
CEEEEEEECCCCCCHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
GNTIDLRVVVEAGMPGIAMALAVMAVSGTALVLADIFIGGGRGTAGIAASSTAGAAVATP
CCCEEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCH
HLVAQAAPQFATVAPSATALVAACVVITAVLVPLASTWWASRVAPRIHAMDGQPS
HHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCC
>Mature Secondary Structure
MNSAISAGKAHRSQGAPQYAPAERPAQYITMKIKSTIEKIPGGMMLVPLLLGAALHTVRP
CCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
DTGKYYGSFTQGLISGVVPILAVWMFCLGASIHLRATGALLRKSGALVGAKIGTAWLAAW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCEEEHHHHHHHHHHH
LLPLWIPVDGLRTGFFAGLSVLAVVAALDMTNGGLYASIMEEHGTREEAGVSVLIGLESG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEEECCC
PLVTMLILGSTGLAAFEPRLLVGVAIPFIAGFVLGNLDPELRSFFSPATRVLIPFFAFAL
CEEEEEEECCCCCCHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
GNTIDLRVVVEAGMPGIAMALAVMAVSGTALVLADIFIGGGRGTAGIAASSTAGAAVATP
CCCEEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCH
HLVAQAAPQFATVAPSATALVAACVVITAVLVPLASTWWASRVAPRIHAMDGQPS
HHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA