BacMap

Definition	Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession	NC_008752
Length	5,352,772

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The map label for this gene is ucpA [C]

Identifier: 120612517

GI number: 120612517

Start: 4300006

End: 4300806

Strand: Reverse

Name: ucpA [C]

Synonym: Aave_3876

Alternate gene names: 120612517

Gene position: 4300806-4300006 (Counterclockwise)

Preceding gene: 120612521

Following gene: 120612516

Centisome position: 80.35

GC content: 67.79

Gene sequence:

>801_bases
TTGACTCGGCTTTTCTGGAAGGAGCTTCGATGCGACGTTTGCAAGGAAAAACCGTCCTGGTCACCGCCGCGGGCCAGGGC
ATCGGCAGGGCCAGCGCCCTGGCGATGGTCCGGGAGAGGGGCCGAGGTCTGGGCCACGGACATCGATGACCAGGCCCTGG
CCGAGCTCGCTGCCGAAGCGGCCCTCGAGGACAGCCCGCCCCTGAGAACGGCCCGCCTGGACGTGCGGGACAGCGCAGCG
GTCCACGCCTTCGCCGGGCATACCGGCCGGGTGGACGTGCTGTTCAACTGCGCGGGCTACGTGCACCACGGCGACATCCT
CGCGTGCGAGGAGAAGGATTGGGATTTCACTGTCGATCTGAACGTCAAGTCCATGTACCGCACCATCCGCGCCTACCTGC
CGTCCATGCTCGCAGGAGGGGGCGGCTGCATCATCAACATGGCCTCGGCGGCGTCCAGCGTGAAAGGCGTGCCAAACCGC
TTTGCCTACGGTGCCTCCAAGGCGGCGGTGATCGGACTGACGAAGGCGCTGGCGACCGACTATGTCCAGAAGGGCATCCG
CTGCAATGCCATCTGCCCGGGCACCATCGAATCTCCCTCGCTGCGAGGGCGCATCCGGGAGCAGTCCGCGCGCTCCGGTG
CCGATGAGGCCGAAGTCCGGGCCGCCTTCGTCGCGCGGCAGCCGGCCGGTCGCCTGGGGCGCCCCGAAGAGGTGGCCGCG
CTGGTGGTGTATCTCGCGAGCGACGAGGCCTCCTTCACGACCGGCGCCATCCACATGATCGACGGTGGATGGTCCAACTG
A

Upstream 100 bases:

>100_bases
CTCAGCGGGAGCATATTGCGGGGCGCCTTGGGAACGGTGCGCTTTGCCAGCGGAAATAGCGCTGTTCATTAATGGAGTGG
ATTAATTGTTTTTTGCCTGA

Downstream 100 bases:

>100_bases
CGCAGGTTCGCCGAGAATGTCCGGCAAACCCCGTCTGGAGATACGCATGAAATTGGTACGTTACGGCCAGCCTGGCCGGG
AAAAGCCCGGACTCGTCGAT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MTRLFWKELRCDVCKEKPSWSPPRARASAGPAPWRWSGRGAEVWATDIDDQALAELAAEAALEDSPPLRTARLDVRDSAA
VHAFAGHTGRVDVLFNCAGYVHHGDILACEEKDWDFTVDLNVKSMYRTIRAYLPSMLAGGGGCIINMASAASSVKGVPNR
FAYGASKAAVIGLTKALATDYVQKGIRCNAICPGTIESPSLRGRIREQSARSGADEAEVRAAFVARQPAGRLGRPEEVAA
LVVYLASDEASFTTGAIHMIDGGWSN

Sequences:

>Translated_266_residues
MTRLFWKELRCDVCKEKPSWSPPRARASAGPAPWRWSGRGAEVWATDIDDQALAELAAEAALEDSPPLRTARLDVRDSAA
VHAFAGHTGRVDVLFNCAGYVHHGDILACEEKDWDFTVDLNVKSMYRTIRAYLPSMLAGGGGCIINMASAASSVKGVPNR
FAYGASKAAVIGLTKALATDYVQKGIRCNAICPGTIESPSLRGRIREQSARSGADEAEVRAAFVARQPAGRLGRPEEVAA
LVVYLASDEASFTTGAIHMIDGGWSN
>Mature_265_residues
TRLFWKELRCDVCKEKPSWSPPRARASAGPAPWRWSGRGAEVWATDIDDQALAELAAEAALEDSPPLRTARLDVRDSAAV
HAFAGHTGRVDVLFNCAGYVHHGDILACEEKDWDFTVDLNVKSMYRTIRAYLPSMLAGGGGCIINMASAASSVKGVPNRF
AYGASKAAVIGLTKALATDYVQKGIRCNAICPGTIESPSLRGRIREQSARSGADEAEVRAAFVARQPAGRLGRPEEVAAL
VVYLASDEASFTTGAIHMIDGGWSN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI66933014, Length=230, Percent_Identity=53.4782608695652, Blast_Score=249, Evalue=1e-66,
Organism=Homo sapiens, GI15277342, Length=242, Percent_Identity=30.1652892561983, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI32483357, Length=216, Percent_Identity=30.5555555555556, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI126723750, Length=219, Percent_Identity=28.7671232876712, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI59889578, Length=197, Percent_Identity=35.0253807106599, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI19923817, Length=224, Percent_Identity=29.9107142857143, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI40254992, Length=179, Percent_Identity=29.0502793296089, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI10190704, Length=199, Percent_Identity=30.6532663316583, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI31542939, Length=182, Percent_Identity=31.3186813186813, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI142976729, Length=167, Percent_Identity=31.1377245508982, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI5031737, Length=207, Percent_Identity=28.5024154589372, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI7705925, Length=207, Percent_Identity=24.6376811594203, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87082100, Length=196, Percent_Identity=39.2857142857143, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1789208, Length=179, Percent_Identity=36.3128491620112, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787335, Length=196, Percent_Identity=31.6326530612245, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786812, Length=212, Percent_Identity=29.7169811320755, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788459, Length=178, Percent_Identity=35.3932584269663, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790717, Length=228, Percent_Identity=27.6315789473684, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI2367365, Length=194, Percent_Identity=30.9278350515464, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789378, Length=184, Percent_Identity=29.8913043478261, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787905, Length=234, Percent_Identity=29.0598290598291, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082160, Length=179, Percent_Identity=29.0502793296089, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789057, Length=177, Percent_Identity=26.5536723163842, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=176, Percent_Identity=35.2272727272727, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=192, Percent_Identity=36.4583333333333, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=191, Percent_Identity=35.6020942408377, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=200, Percent_Identity=31.5, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17560676, Length=176, Percent_Identity=31.8181818181818, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17555706, Length=242, Percent_Identity=29.3388429752066, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=225, Percent_Identity=31.5555555555556, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=187, Percent_Identity=29.9465240641711, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=199, Percent_Identity=31.1557788944724, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=207, Percent_Identity=29.4685990338164, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=204, Percent_Identity=28.4313725490196, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=194, Percent_Identity=28.8659793814433, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=197, Percent_Identity=29.4416243654822, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=186, Percent_Identity=27.9569892473118, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=223, Percent_Identity=27.8026905829596, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571526, Length=198, Percent_Identity=36.3636363636364, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI21357041, Length=207, Percent_Identity=33.8164251207729, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24639444, Length=243, Percent_Identity=30.0411522633745, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI23397609, Length=180, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI21355319, Length=178, Percent_Identity=34.2696629213483, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644339, Length=178, Percent_Identity=31.4606741573034, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24644337, Length=178, Percent_Identity=35.3932584269663, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24643142, Length=226, Percent_Identity=28.3185840707965, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI17737361, Length=249, Percent_Identity=30.9236947791165, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI18859837, Length=157, Percent_Identity=29.9363057324841, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28536; Mature: 28405

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLFWKELRCDVCKEKPSWSPPRARASAGPAPWRWSGRGAEVWATDIDDQALAELAAEA
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCHHHHHHHHHHH
ALEDSPPLRTARLDVRDSAAVHAFAGHTGRVDVLFNCAGYVHHGDILACEEKDWDFTVDL
HCCCCCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCEEECCCEEEECCCCCCEEEEE
NVKSMYRTIRAYLPSMLAGGGGCIINMASAASSVKGVPNRFAYGASKAAVIGLTKALATD
CHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHH
YVQKGIRCNAICPGTIESPSLRGRIREQSARSGADEAEVRAAFVARQPAGRLGRPEEVAA
HHHCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHEE
LVVYLASDEASFTTGAIHMIDGGWSN
EEEEEECCCCCCEECEEEEECCCCCC
>Mature Secondary Structure 
TRLFWKELRCDVCKEKPSWSPPRARASAGPAPWRWSGRGAEVWATDIDDQALAELAAEA
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCHHHHHHHHHHH
ALEDSPPLRTARLDVRDSAAVHAFAGHTGRVDVLFNCAGYVHHGDILACEEKDWDFTVDL
HCCCCCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCEEECCCEEEECCCCCCEEEEE
NVKSMYRTIRAYLPSMLAGGGGCIINMASAASSVKGVPNRFAYGASKAAVIGLTKALATD
CHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHH
YVQKGIRCNAICPGTIESPSLRGRIREQSARSGADEAEVRAAFVARQPAGRLGRPEEVAA
HHHCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHEE
LVVYLASDEASFTTGAIHMIDGGWSN
EEEEEECCCCCCEECEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]