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The map label for this gene is secB

Identifier: 120612496

GI number: 120612496

Start: 4282888

End: 4283346

Strand: Reverse

Name: secB

Synonym: Aave_3855

Alternate gene names: 120612496

Gene position: 4283346-4282888 (Counterclockwise)

Preceding gene: 120612497

Following gene: 120612495

Centisome position: 80.02

GC content: 64.05

Gene sequence:

>459_bases
ATGTCCGAAGAAAATCCCGTGTTCCAGATCCAGCGCGTGTATCTGAAGGATCTGTCCCTGGAGCAGCCGAACTCGCCCCA
GATCCTGCTGGAGCAGGAGCAGCCCAACGTGGACATCCAGCTGGGCGTCGAGGCCGCGCCGGTCGCCGACGGTATTTTCG
AAGTGGCCGTGACGGCCACGGTGCAGACCAAGATCAAGGACAAGACGGTGTTCCTGGTCGAGGCCAAGCAGGCCGGCATC
TTCGAGATCCGCAACATTCCGGAAGACCAGATGGGCCCGATCATGGGCATCGCCTGCCCGCAGATCGTCTATCCCTACCT
GCGCGGCAACATCGCCGACGTGATCACGCGCGCCGGCTTCCCGCCCGTGCACCTGGCGGAGATCAACTTCCAGGCCATGT
ACGAGCAGCAGCAGTCGCAGCTGGCCTCGGCCGCGCCGACGCCGGGCGTCACGCAGTAA

Upstream 100 bases:

>100_bases
ATGCGGCCCCGGGTGCTGCCCGCTGCGGGAACGCGATGTCCCCGGCGGGCTTTGTCTTACCTGCCCCTTTCCCCCGTTTC
CGAATCGAAAGAACGACCTC

Downstream 100 bases:

>100_bases
TTCTTCCCACCGGGCGCCGCCGCGCGGCGGCGCATCGCAGCCGGGGACTGCGAGCGGTTCCCCTGCCGAAACCGCAACGA
CATCCCCCATGAAGATCATC

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MSEENPVFQIQRVYLKDLSLEQPNSPQILLEQEQPNVDIQLGVEAAPVADGIFEVAVTATVQTKIKDKTVFLVEAKQAGI
FEIRNIPEDQMGPIMGIACPQIVYPYLRGNIADVITRAGFPPVHLAEINFQAMYEQQQSQLASAAPTPGVTQ

Sequences:

>Translated_152_residues
MSEENPVFQIQRVYLKDLSLEQPNSPQILLEQEQPNVDIQLGVEAAPVADGIFEVAVTATVQTKIKDKTVFLVEAKQAGI
FEIRNIPEDQMGPIMGIACPQIVYPYLRGNIADVITRAGFPPVHLAEINFQAMYEQQQSQLASAAPTPGVTQ
>Mature_151_residues
SEENPVFQIQRVYLKDLSLEQPNSPQILLEQEQPNVDIQLGVEAAPVADGIFEVAVTATVQTKIKDKTVFLVEAKQAGIF
EIRNIPEDQMGPIMGIACPQIVYPYLRGNIADVITRAGFPPVHLAEINFQAMYEQQQSQLASAAPTPGVTQ

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=145, Percent_Identity=40.6896551724138, Blast_Score=120, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_ACIAC (A1TTW2)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_972174.1
- ProteinModelPortal:   A1TTW2
- SMR:   A1TTW2
- STRING:   A1TTW2
- GeneID:   4667314
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_3855
- NMPDR:   fig|397945.5.peg.3289
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   A1TTW2
- ProtClustDB:   PRK05751
- BioCyc:   AAVE397945:AAVE_3855-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 16719; Mature: 16588

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEENPVFQIQRVYLKDLSLEQPNSPQILLEQEQPNVDIQLGVEAAPVADGIFEVAVTAT
CCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEECCCCCCHHCCCEEEEEEEE
VQTKIKDKTVFLVEAKQAGIFEIRNIPEDQMGPIMGIACPQIVYPYLRGNIADVITRAGF
EEEEECCCEEEEEECCCCCEEEECCCCCHHCCCEEECCCHHHHHHHHCCCHHHHHHHCCC
PPVHLAEINFQAMYEQQQSQLASAAPTPGVTQ
CCEEEEECCHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SEENPVFQIQRVYLKDLSLEQPNSPQILLEQEQPNVDIQLGVEAAPVADGIFEVAVTAT
CCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEECCCCCCHHCCCEEEEEEEE
VQTKIKDKTVFLVEAKQAGIFEIRNIPEDQMGPIMGIACPQIVYPYLRGNIADVITRAGF
EEEEECCCEEEEEECCCCCEEEECCCCCHHCCCEEECCCHHHHHHHHCCCHHHHHHHCCC
PPVHLAEINFQAMYEQQQSQLASAAPTPGVTQ
CCEEEEECCHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA