Click here to switch to the map view.

The map label for this gene is insF1 [C]

Identifier: 120612439

GI number: 120612439

Start: 4220130

End: 4221224

Strand: Direct

Name: insF1 [C]

Synonym: Aave_3798

Alternate gene names: 120612439

Gene position: 4220130-4221224 (Clockwise)

Preceding gene: 120612438

Following gene: 120612440

Centisome position: 78.84

GC content: 69.5

Gene sequence:

>1095_bases
ATGATCGGCCTGCAAGATCGCCAGCAACTGGCCCGCGACATCCAGATCGCCCACGACAGCGGCGCGCGGCTGCACCTGGC
CTGTCAGGTCGCCGGTATCGACGTGCGCACGCTGCAGCGCTACAAGGCTGCGGGTGGGCTGGCCCAGGGCGATGCACGGC
CTCAGGCGCTGCGCCCCACGCCAAGCCATGCCTTGACCGAGGCCGAACGCCAGCGGCTGGTGCAGGTGGCCAACGCACCG
CGCTTTGCCGACGTGCCGCCGGCGCGCATCGTGCCCATGTTGGCCGACGAGGGTGTCTACCTGGCCAGCGAATCGAGCTT
CGCGCGGGTGCTGCGTGCGCACGGGCAGAACGCCCATCGCGGTCGCGCCCGATCGCCGCAGGCCAGCCGCGCGCCCAGCA
CCCATGTGGCCACGGCGCCCGGCCAGGTGTGGTGCTGGGACATGACCTATCTGCCGGCCCGCGTCGCCGGGCGCTGGTTC
CACCTGTACCTGATCATGGATCTGTACAGCCGCAAGATCGTGGGCTTCGAGGTGCACGACAGCGACCAGGCCGAGCATGC
CGCACGACTGGTGCGCCGCACGGCGCTGGCCGAGGGCATCGCCGCGCGCGCCGACAAGCCAGTGCTGCACGGCGACAACG
GAGCCACGTTGAAGGCCACCACGGTGCTGGCCATGCTGCACTGGTTGGGCGTCAAGCCTTCGTACTCGCGCCCCCGCGTG
AGTGACGACAACGCCTTCGTGGAAAGCCTGTTCCGTACCGCCAAATACCGCCCCGAGTTCCCCGCCAGCGGCGGCTTCGA
CGATCTGGACCAGGTACGCCAGTGGACCAGCGGCTTCGTGCATTGGTACAACTGCGAGCACCGCCACAGCGCGATCGGCT
ACGTCACGCCGACGCAGCGCCATGCCGGGCAGGACCAGGCCATCCTGCAGGCTCGCCATCACCTTTACACCCAGGCCCGA
CAGCGCAACCCCGCGCGCTGGTCGGGCAGCACCCGCAACTGGGCGCCGGTCCAATCGGTCACGCTCAACCCTGAGCGCGA
CGGCATCTCCAATGCCGCGGCGACCGCATCGAATACGCAGCCTCGGGCTGCTTGA

Upstream 100 bases:

>100_bases
AGCGCGACCTGCGTCGCAAGGACCGGGCACTGGCGGAAACCGCGGCGCTCTTGGTGCTATCAAAAAAGCTCGAGGCGATC
TTGCCCGGGGACGAGGACGA

Downstream 100 bases:

>100_bases
TCGACGCGACAACTACCTTGACATGCTCCGTCGGGCTCCAGGTCCATGAGGTCGTAGAAGCGGTCCACGAGGGTGCGCAC
GGCGGGTTCGCCGCCGATCC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: Integrase Catalytic Region; Integrase Catalytic Subunit; Integrase; ISRin3 Transposase; Transposase IS3 Family; Transposase OrfB; Integrase Catalytic Domain-Containing Protein; Transposase Degenerate; Transposase Of; IS5 Family Transposase OrfB; Transposase For Insertion Sequence Element; ISSdy1 Transposase OrfB; Integrase Core Domain Protein; ISPsy11 Transposase OrfB; ISVisp1 Transposase OrfB; Transposase InsF; ISHne1 Transposase; Helix-Turn-Helix Domain Containing Protein Fis-Type; Helix-Turn-Helix Fis-Type; ISCps3 Transposase OrfB; Integrase Catalytic Domain; ISCps9 Transposase OrfB; IS3 Family Transposase OrfB

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MIGLQDRQQLARDIQIAHDSGARLHLACQVAGIDVRTLQRYKAAGGLAQGDARPQALRPTPSHALTEAERQRLVQVANAP
RFADVPPARIVPMLADEGVYLASESSFARVLRAHGQNAHRGRARSPQASRAPSTHVATAPGQVWCWDMTYLPARVAGRWF
HLYLIMDLYSRKIVGFEVHDSDQAEHAARLVRRTALAEGIAARADKPVLHGDNGATLKATTVLAMLHWLGVKPSYSRPRV
SDDNAFVESLFRTAKYRPEFPASGGFDDLDQVRQWTSGFVHWYNCEHRHSAIGYVTPTQRHAGQDQAILQARHHLYTQAR
QRNPARWSGSTRNWAPVQSVTLNPERDGISNAAATASNTQPRAA

Sequences:

>Translated_364_residues
MIGLQDRQQLARDIQIAHDSGARLHLACQVAGIDVRTLQRYKAAGGLAQGDARPQALRPTPSHALTEAERQRLVQVANAP
RFADVPPARIVPMLADEGVYLASESSFARVLRAHGQNAHRGRARSPQASRAPSTHVATAPGQVWCWDMTYLPARVAGRWF
HLYLIMDLYSRKIVGFEVHDSDQAEHAARLVRRTALAEGIAARADKPVLHGDNGATLKATTVLAMLHWLGVKPSYSRPRV
SDDNAFVESLFRTAKYRPEFPASGGFDDLDQVRQWTSGFVHWYNCEHRHSAIGYVTPTQRHAGQDQAILQARHHLYTQAR
QRNPARWSGSTRNWAPVQSVTLNPERDGISNAAATASNTQPRAA
>Mature_364_residues
MIGLQDRQQLARDIQIAHDSGARLHLACQVAGIDVRTLQRYKAAGGLAQGDARPQALRPTPSHALTEAERQRLVQVANAP
RFADVPPARIVPMLADEGVYLASESSFARVLRAHGQNAHRGRARSPQASRAPSTHVATAPGQVWCWDMTYLPARVAGRWF
HLYLIMDLYSRKIVGFEVHDSDQAEHAARLVRRTALAEGIAARADKPVLHGDNGATLKATTVLAMLHWLGVKPSYSRPRV
SDDNAFVESLFRTAKYRPEFPASGGFDDLDQVRQWTSGFVHWYNCEHRHSAIGYVTPTQRHAGQDQAILQARHHLYTQAR
QRNPARWSGSTRNWAPVQSVTLNPERDGISNAAATASNTQPRAA

Specific function: Involved in the transposition of the insertion sequence is3 [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40294; Mature: 40294

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGLQDRQQLARDIQIAHDSGARLHLACQVAGIDVRTLQRYKAAGGLAQGDARPQALRPT
CCCCHHHHHHHHHHEEECCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCC
PSHALTEAERQRLVQVANAPRFADVPPARIVPMLADEGVYLASESSFARVLRAHGQNAHR
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHEEHHCCCCCEEEECCHHHHHHHHHCCCCCCC
GRARSPQASRAPSTHVATAPGQVWCWDMTYLPARVAGRWFHLYLIMDLYSRKIVGFEVHD
CCCCCCCCCCCCCCCEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC
SDQAEHAARLVRRTALAEGIAARADKPVLHGDNGATLKATTVLAMLHWLGVKPSYSRPRV
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCC
SDDNAFVESLFRTAKYRPEFPASGGFDDLDQVRQWTSGFVHWYNCEHRHSAIGYVTPTQR
CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCHH
HAGQDQAILQARHHLYTQARQRNPARWSGSTRNWAPVQSVTLNPERDGISNAAATASNTQ
HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCC
PRAA
CCCC
>Mature Secondary Structure
MIGLQDRQQLARDIQIAHDSGARLHLACQVAGIDVRTLQRYKAAGGLAQGDARPQALRPT
CCCCHHHHHHHHHHEEECCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCC
PSHALTEAERQRLVQVANAPRFADVPPARIVPMLADEGVYLASESSFARVLRAHGQNAHR
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHEEHHCCCCCEEEECCHHHHHHHHHCCCCCCC
GRARSPQASRAPSTHVATAPGQVWCWDMTYLPARVAGRWFHLYLIMDLYSRKIVGFEVHD
CCCCCCCCCCCCCCCEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC
SDQAEHAARLVRRTALAEGIAARADKPVLHGDNGATLKATTVLAMLHWLGVKPSYSRPRV
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCC
SDDNAFVESLFRTAKYRPEFPASGGFDDLDQVRQWTSGFVHWYNCEHRHSAIGYVTPTQR
CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCHH
HAGQDQAILQARHHLYTQARQRNPARWSGSTRNWAPVQSVTLNPERDGISNAAATASNTQ
HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCC
PRAA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA