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The map label for this gene is sspB [H]

Identifier: 120612336

GI number: 120612336

Start: 4069915

End: 4070514

Strand: Reverse

Name: sspB [H]

Synonym: Aave_3692

Alternate gene names: 120612336

Gene position: 4070514-4069915 (Counterclockwise)

Preceding gene: 120612337

Following gene: 120612334

Centisome position: 76.04

GC content: 70.0

Gene sequence:

>600_bases
ATGCGGCGCGGCCGCACCCGCGCGCCGCGTTCCGCTTCCCAAAAAGCCCTTTTGCCAGACGCCGACATGATGAATGCCCA
GGACTCCACTTCCACGCGCCCCTACCTGATCCGGGCCCTGTACGAGTGGTGTACCGACAACGGCTTCACGCCCTACATCG
CGGTGCGCGTGGACGATTCCGTCCAGGTGCCCCGCGAGTACGTGAAGGATGGCGAGATCGTGCTCAACATCAGCTACGAC
GCCACGAGCGCCCTGCAGCTGGGCAACGATTTCATCGAGTTCAAGGCCCGCTTCGGCGGCAAGCCGCGCGACATCATGGT
CCCCGTGGGCCGGGTGATCGCGATCTATGCGCGCGAGAACGGGCAGGGCATGGCCTTTCCGCCGCCGGTGGACATGCTGG
CACCCGGCGCGGGCGGCCTGTCCTCGGGGCTGCTGGACGCCGGAGGCACCCCGGAAGGCACCGTGCCGGAACCGTCCACC
GACGAGGACCGGGTGGTGCAGCTGGTGCCCACCGAGGGCAGCGCCAGCCCGGCGGACGAGCCGCCGCGCGGCCCGGCCCC
TGCCGGTGGTGGCCGCCCGTCGCTCAAGCGGGTGAAGTGA

Upstream 100 bases:

>100_bases
CCAAGAACGCCGCCCCGCTGCTGAAGTACGCCGAGCGCATCTTCTCGCGCCCCGCCTACATCGAGGCGCTCACGCCTTCC
GAGAAGGTCATGCGCAAGTA

Downstream 100 bases:

>100_bases
TCCGGGCCGGCACCGGCCGGCATGCCGCCGTTCCCTCCCGGGAGCGGCAGGCGCGCTAGAATGCGCGCTTCGCCGATTTA
GCTCAGTTGGTAGAGCAACC

Product: stringent starvation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MRRGRTRAPRSASQKALLPDADMMNAQDSTSTRPYLIRALYEWCTDNGFTPYIAVRVDDSVQVPREYVKDGEIVLNISYD
ATSALQLGNDFIEFKARFGGKPRDIMVPVGRVIAIYARENGQGMAFPPPVDMLAPGAGGLSSGLLDAGGTPEGTVPEPST
DEDRVVQLVPTEGSASPADEPPRGPAPAGGGRPSLKRVK

Sequences:

>Translated_199_residues
MRRGRTRAPRSASQKALLPDADMMNAQDSTSTRPYLIRALYEWCTDNGFTPYIAVRVDDSVQVPREYVKDGEIVLNISYD
ATSALQLGNDFIEFKARFGGKPRDIMVPVGRVIAIYARENGQGMAFPPPVDMLAPGAGGLSSGLLDAGGTPEGTVPEPST
DEDRVVQLVPTEGSASPADEPPRGPAPAGGGRPSLKRVK
>Mature_199_residues
MRRGRTRAPRSASQKALLPDADMMNAQDSTSTRPYLIRALYEWCTDNGFTPYIAVRVDDSVQVPREYVKDGEIVLNISYD
ATSALQLGNDFIEFKARFGGKPRDIMVPVGRVIAIYARENGQGMAFPPPVDMLAPGAGGLSSGLLDAGGTPEGTVPEPST
DEDRVVQLVPTEGSASPADEPPRGPAPAGGGRPSLKRVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=106, Percent_Identity=53.7735849056604, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 21256; Mature: 21256

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRGRTRAPRSASQKALLPDADMMNAQDSTSTRPYLIRALYEWCTDNGFTPYIAVRVDDS
CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCC
VQVPREYVKDGEIVLNISYDATSALQLGNDFIEFKARFGGKPRDIMVPVGRVIAIYAREN
CCCCHHHHCCCCEEEEEECCCCHHHHHCCHHHHHHHHHCCCCCEEEEECCEEEEEEECCC
GQGMAFPPPVDMLAPGAGGLSSGLLDAGGTPEGTVPEPSTDEDRVVQLVPTEGSASPADE
CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
PPRGPAPAGGGRPSLKRVK
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRRGRTRAPRSASQKALLPDADMMNAQDSTSTRPYLIRALYEWCTDNGFTPYIAVRVDDS
CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCC
VQVPREYVKDGEIVLNISYDATSALQLGNDFIEFKARFGGKPRDIMVPVGRVIAIYAREN
CCCCHHHHCCCCEEEEEECCCCHHHHHCCHHHHHHHHHCCCCCEEEEECCEEEEEEECCC
GQGMAFPPPVDMLAPGAGGLSSGLLDAGGTPEGTVPEPSTDEDRVVQLVPTEGSASPADE
CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
PPRGPAPAGGGRPSLKRVK
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]