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The map label for this gene is yebA [H]

Identifier: 120612334

GI number: 120612334

Start: 4068417

End: 4069403

Strand: Reverse

Name: yebA [H]

Synonym: Aave_3690

Alternate gene names: 120612334

Gene position: 4069403-4068417 (Counterclockwise)

Preceding gene: 120612336

Following gene: 120612333

Centisome position: 76.02

GC content: 71.33

Gene sequence:

>987_bases
ATGCGCCGCGCGGCGCGGAGAAACGAAGTGCAGTTGATTATCACGGACGCCTGGCTGGCGCGCAGCCGCGCCATCCACCT
CTCGGGCCTGCGCCTGGCCGCCTTCGGGCTGCTGCTGTCGGTGGGGGTGATGCTCATGGCGGCACTGCTCTACCACTGGG
TGTTCCTCAAGGGCGCCCGGGAGGGCTGGCCGGTGGTCGGCACCCTGGTGCGGCTGGCCACGCGGGACGAATCCGCCGAG
CGCGACCGCTTCATGCGGGCCAACCTGGACGCCATGGCCCGCAAGGTCGGCGAGATGCAGGCGCGCATGCTGCAGCTCGA
ATCCCTCGGCGAGCGCGTCTCCGGCCTGGCGGGCATGTCGCCCGCGGAATTCTCCCGCCCGCCGGGGCAGGGCGGGGCGC
TGGTCTCCGGCCGGCCGATGGAAATGGAAGAGCTGCAGCGCACGCTCGACGCGCTCGCCGAACTCACCGACCGCCGGGTG
GACCTGCTCACCGTGGTCGAGTCCCGCCTGTTCGACCAGCACATCCGCAAGAACATGGTGCCCACGCAGGAGCCCGTGCT
CGGCAAGACCGCCGGCTCGGCCTTCGGCTGGCGCATCGATCCCTTCACCGGCCAGTCGGCCCTGCACACGGGGCTGGACT
TCCAGGCGGACGCCGGCACGCCCATCCTGGCCGCGGCCGGGGGCGTGGTCGTGGTGCAGGAATTCCATCCGGCCTACGGC
AACATGGTCGAGATCGACCACGGCAACCAGCTGGTCACCCGCTACGCCCATGCCTCCCGCACCCTCGTCAAGCGCGGCGA
CCTCGTGCGCCGCGGCCAGAAGATCGCCGAGGTCGGCACTACCGGCCGCTCCACCGGCCACCACCTGCATTTCGAAGTGC
TGGTGCAGGGCGTCCCGCAGGACCCGCAGAAATTCCTGCATGCCGGTGCGGCCGGTGCCCCAGCCGGCACGCAGGTGGCG
GCGAAGGCCGTCGCGCCTCGCAGGTAA

Upstream 100 bases:

>100_bases
CGCTCGAGTCGCGCGTCAGGCTCGCCAGCCGTGCCAGCGTGGGGGAATCCTCGGTGGCCTGCTGCAGCGTGACGGCGTGG
TGACGGCGGTTCATGGGGCA

Downstream 100 bases:

>100_bases
AATCCCCGCTCCGGAATCGCTGCCCCTGGTTGCAGAACTTGCAAGCAGTGGTAGCGTCCCCCATCTGAACCCACTTCATC
ACTAGGGATTCGGGTCGCGC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MRRAARRNEVQLIITDAWLARSRAIHLSGLRLAAFGLLLSVGVMLMAALLYHWVFLKGAREGWPVVGTLVRLATRDESAE
RDRFMRANLDAMARKVGEMQARMLQLESLGERVSGLAGMSPAEFSRPPGQGGALVSGRPMEMEELQRTLDALAELTDRRV
DLLTVVESRLFDQHIRKNMVPTQEPVLGKTAGSAFGWRIDPFTGQSALHTGLDFQADAGTPILAAAGGVVVVQEFHPAYG
NMVEIDHGNQLVTRYAHASRTLVKRGDLVRRGQKIAEVGTTGRSTGHHLHFEVLVQGVPQDPQKFLHAGAAGAPAGTQVA
AKAVAPRR

Sequences:

>Translated_328_residues
MRRAARRNEVQLIITDAWLARSRAIHLSGLRLAAFGLLLSVGVMLMAALLYHWVFLKGAREGWPVVGTLVRLATRDESAE
RDRFMRANLDAMARKVGEMQARMLQLESLGERVSGLAGMSPAEFSRPPGQGGALVSGRPMEMEELQRTLDALAELTDRRV
DLLTVVESRLFDQHIRKNMVPTQEPVLGKTAGSAFGWRIDPFTGQSALHTGLDFQADAGTPILAAAGGVVVVQEFHPAYG
NMVEIDHGNQLVTRYAHASRTLVKRGDLVRRGQKIAEVGTTGRSTGHHLHFEVLVQGVPQDPQKFLHAGAAGAPAGTQVA
AKAVAPRR
>Mature_328_residues
MRRAARRNEVQLIITDAWLARSRAIHLSGLRLAAFGLLLSVGVMLMAALLYHWVFLKGAREGWPVVGTLVRLATRDESAE
RDRFMRANLDAMARKVGEMQARMLQLESLGERVSGLAGMSPAEFSRPPGQGGALVSGRPMEMEELQRTLDALAELTDRRV
DLLTVVESRLFDQHIRKNMVPTQEPVLGKTAGSAFGWRIDPFTGQSALHTGLDFQADAGTPILAAAGGVVVVQEFHPAYG
NMVEIDHGNQLVTRYAHASRTLVKRGDLVRRGQKIAEVGTTGRSTGHHLHFEVLVQGVPQDPQKFLHAGAAGAPAGTQVA
AKAVAPRR

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=105, Percent_Identity=46.6666666666667, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082174, Length=109, Percent_Identity=38.5321100917431, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789099, Length=109, Percent_Identity=34.8623853211009, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 35667; Mature: 35667

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRAARRNEVQLIITDAWLARSRAIHLSGLRLAAFGLLLSVGVMLMAALLYHWVFLKGAR
CCCCCCCCCEEEEEECHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EGWPVVGTLVRLATRDESAERDRFMRANLDAMARKVGEMQARMLQLESLGERVSGLAGMS
CCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PAEFSRPPGQGGALVSGRPMEMEELQRTLDALAELTDRRVDLLTVVESRLFDQHIRKNMV
CHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PTQEPVLGKTAGSAFGWRIDPFTGQSALHTGLDFQADAGTPILAAAGGVVVVQEFHPAYG
CCCCCCCCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCCCC
NMVEIDHGNQLVTRYAHASRTLVKRGDLVRRGQKIAEVGTTGRSTGHHLHFEVLVQGVPQ
CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHEECCCCC
DPQKFLHAGAAGAPAGTQVAAKAVAPRR
CHHHHHHCCCCCCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MRRAARRNEVQLIITDAWLARSRAIHLSGLRLAAFGLLLSVGVMLMAALLYHWVFLKGAR
CCCCCCCCCEEEEEECHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EGWPVVGTLVRLATRDESAERDRFMRANLDAMARKVGEMQARMLQLESLGERVSGLAGMS
CCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PAEFSRPPGQGGALVSGRPMEMEELQRTLDALAELTDRRVDLLTVVESRLFDQHIRKNMV
CHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PTQEPVLGKTAGSAFGWRIDPFTGQSALHTGLDFQADAGTPILAAAGGVVVVQEFHPAYG
CCCCCCCCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCCCC
NMVEIDHGNQLVTRYAHASRTLVKRGDLVRRGQKIAEVGTTGRSTGHHLHFEVLVQGVPQ
CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHEECCCCC
DPQKFLHAGAAGAPAGTQVAAKAVAPRR
CHHHHHHCCCCCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]