Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is 120612272
Identifier: 120612272
GI number: 120612272
Start: 3999570
End: 4000988
Strand: Direct
Name: 120612272
Synonym: Aave_3626
Alternate gene names: NA
Gene position: 3999570-4000988 (Clockwise)
Preceding gene: 120612271
Following gene: 120612280
Centisome position: 74.72
GC content: 69.98
Gene sequence:
>1419_bases ATGACATCCATTCCTCCATCATTCCGTCCGGGCCGCACCGAATCCGCCCGGCCCGCGACCCCGGTGCCCGGCGGCGAAAG CGGCACGGCACGGCCGTCGCAGACCCGCCGCTCATCCCGCCGCGATGCGGCAGGACCGCTGGCAGAGCTGCGCGGCATCC GTGGCCCGGGCCTGGGCCGCCCGCCATCCCGCGCAGGGCTGCGCGCCCCCCGGCAGGCGCCGGCGACAGCACTTTGGCCC GCGCTCCTGTTCGCGGCGCTCTGGACCCGGGCGGAAAGCTCGCGCCCGGCGCGCACGCCAGTGCCCCTGTCCGCAGCGGA AGCCGCGGTCCTCGAGCGGCTCAGGCAATCCCGCCCCGCCCGGCCGCAGAACTGCATTCTGTTCAGTGATCCCAACAAGG ACCCGGACGACGCGGTGTCCTTCGTCATCGGAAAACCCTTGCAGGACATGGGGCTGGCGAAGATCCACCACGTCGTGACC ACACTCGGCCCTGCCGACATCCGGAAGGAGCGCGCGCGATTCGCCAAGGGGGTATTCGATGCCCTCGGCATGCCCGAGGT CGCCGTATCGGCGGGCCGCGAGTACGACATCGGCCGGCGATCGGCAGACCATGGTGTCTTTCTGCGGCGAGGAGAGTCGC TATGCGTTCCGGAAGACCGCCTGGGGCCGGAAGCAGGGCAGGACATCGGCGGCAGCCTGGCTCGCCTGGACGGCAAGGCC ACGCTGGTGGCGATCGCCGGAATGACCGACGCCAACGCCCTGCTGCAACAGCACCCTGATCTCGTCAAGGAGAAGGTGGA ACGCATCGTCATCATGGGTGGCATCGAGCAGGCCCCGGACGCCGAAGGGTGGGTGCAGCCCGACGAACGCGCCTACAACA ACCACACCGACCAGGCCGCCGCGCGCGCGTTCTACCGCACGGCCCAGGAATACGGCATTCCCCTGCGCATCGTCAGCAAG GAAGCCGCCTATCAGGCGGCAGTACCGCCGGAGCTCTACGAAGCGCTGGGCCAGACCGGCCACCCCGTGGGCAGCTATCT GATGGACATCCAGCGCGACGCACTCAGGCATCTGTGGCGGAGCATCATGGAAGGCCAGATTGCCCGGCTCGACAAACGCT GGTTCTATGACACGTTCGTCGCCCGACCCGGGCAGGACGCACCGGCCTTCGAGGCGTGGCGGGCATCCGCCGAGGCATCC TTCGACGCGGTGTGGGAAAGCATCAGCCGGCTGAACCTCTACGATCCGCTCACGCTGCTCGCCGCCGCCGACGGGCCCGC AGGCATGTTGTTCCGCCCGGCCACCGTGGAAACGCGGGGCACGGGCGGGGTGGAACTGATCGGGGCCGGGCAGGTGGCCG CCCCGGCGGACGCCAGGAACCTGATGTCCGCGCTCGCCAAGACCGCGCTGGGGAGCTGA
Upstream 100 bases:
>100_bases CAGGCAGGCGCGGGCGCGCAGTGCGTGTTGCGCTTCGCGGTATCGCAAGGCTCTGCGCTCCTCCATCCGGCAACTGGCGG CGTTCGCGCAGGATGGAAAG
Downstream 100 bases:
>100_bases CGGGGCGCGCAGCGGCGGGCGGAGCCGGGGATCAACGCATCGGGATCACGAACACCTTGCGCGGCGCCGTGCATCCCGGG CCTTCATAGGGTTCGCTGTC
Product: inosine/uridine-preferring nucleoside hydrolase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 472; Mature: 471
Protein sequence:
>472_residues MTSIPPSFRPGRTESARPATPVPGGESGTARPSQTRRSSRRDAAGPLAELRGIRGPGLGRPPSRAGLRAPRQAPATALWP ALLFAALWTRAESSRPARTPVPLSAAEAAVLERLRQSRPARPQNCILFSDPNKDPDDAVSFVIGKPLQDMGLAKIHHVVT TLGPADIRKERARFAKGVFDALGMPEVAVSAGREYDIGRRSADHGVFLRRGESLCVPEDRLGPEAGQDIGGSLARLDGKA TLVAIAGMTDANALLQQHPDLVKEKVERIVIMGGIEQAPDAEGWVQPDERAYNNHTDQAAARAFYRTAQEYGIPLRIVSK EAAYQAAVPPELYEALGQTGHPVGSYLMDIQRDALRHLWRSIMEGQIARLDKRWFYDTFVARPGQDAPAFEAWRASAEAS FDAVWESISRLNLYDPLTLLAAADGPAGMLFRPATVETRGTGGVELIGAGQVAAPADARNLMSALAKTALGS
Sequences:
>Translated_472_residues MTSIPPSFRPGRTESARPATPVPGGESGTARPSQTRRSSRRDAAGPLAELRGIRGPGLGRPPSRAGLRAPRQAPATALWP ALLFAALWTRAESSRPARTPVPLSAAEAAVLERLRQSRPARPQNCILFSDPNKDPDDAVSFVIGKPLQDMGLAKIHHVVT TLGPADIRKERARFAKGVFDALGMPEVAVSAGREYDIGRRSADHGVFLRRGESLCVPEDRLGPEAGQDIGGSLARLDGKA TLVAIAGMTDANALLQQHPDLVKEKVERIVIMGGIEQAPDAEGWVQPDERAYNNHTDQAAARAFYRTAQEYGIPLRIVSK EAAYQAAVPPELYEALGQTGHPVGSYLMDIQRDALRHLWRSIMEGQIARLDKRWFYDTFVARPGQDAPAFEAWRASAEAS FDAVWESISRLNLYDPLTLLAAADGPAGMLFRPATVETRGTGGVELIGAGQVAAPADARNLMSALAKTALGS >Mature_471_residues TSIPPSFRPGRTESARPATPVPGGESGTARPSQTRRSSRRDAAGPLAELRGIRGPGLGRPPSRAGLRAPRQAPATALWPA LLFAALWTRAESSRPARTPVPLSAAEAAVLERLRQSRPARPQNCILFSDPNKDPDDAVSFVIGKPLQDMGLAKIHHVVTT LGPADIRKERARFAKGVFDALGMPEVAVSAGREYDIGRRSADHGVFLRRGESLCVPEDRLGPEAGQDIGGSLARLDGKAT LVAIAGMTDANALLQQHPDLVKEKVERIVIMGGIEQAPDAEGWVQPDERAYNNHTDQAAARAFYRTAQEYGIPLRIVSKE AAYQAAVPPELYEALGQTGHPVGSYLMDIQRDALRHLWRSIMEGQIARLDKRWFYDTFVARPGQDAPAFEAWRASAEASF DAVWESISRLNLYDPLTLLAAADGPAGMLFRPATVETRGTGGVELIGAGQVAAPADARNLMSALAKTALGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50728; Mature: 50597
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSIPPSFRPGRTESARPATPVPGGESGTARPSQTRRSSRRDAAGPLAELRGIRGPGLGR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCC PPSRAGLRAPRQAPATALWPALLFAALWTRAESSRPARTPVPLSAAEAAVLERLRQSRPA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC RPQNCILFSDPNKDPDDAVSFVIGKPLQDMGLAKIHHVVTTLGPADIRKERARFAKGVFD CCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ALGMPEVAVSAGREYDIGRRSADHGVFLRRGESLCVPEDRLGPEAGQDIGGSLARLDGKA HCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCCCCCHHHCCHHHHCCCCE TLVAIAGMTDANALLQQHPDLVKEKVERIVIMGGIEQAPDAEGWVQPDERAYNNHTDQAA EEEEEECCCHHHHHHHHCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHCCCHHHHH ARAFYRTAQEYGIPLRIVSKEAAYQAAVPPELYEALGQTGHPVGSYLMDIQRDALRHLWR HHHHHHHHHHHCCCEEEECHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH SIMEGQIARLDKRWFYDTFVARPGQDAPAFEAWRASAEASFDAVWESISRLNLYDPLTLL HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHE AAADGPAGMLFRPATVETRGTGGVELIGAGQVAAPADARNLMSALAKTALGS EECCCCCCCEECCCEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure TSIPPSFRPGRTESARPATPVPGGESGTARPSQTRRSSRRDAAGPLAELRGIRGPGLGR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCC PPSRAGLRAPRQAPATALWPALLFAALWTRAESSRPARTPVPLSAAEAAVLERLRQSRPA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC RPQNCILFSDPNKDPDDAVSFVIGKPLQDMGLAKIHHVVTTLGPADIRKERARFAKGVFD CCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ALGMPEVAVSAGREYDIGRRSADHGVFLRRGESLCVPEDRLGPEAGQDIGGSLARLDGKA HCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCCCCCHHHCCHHHHCCCCE TLVAIAGMTDANALLQQHPDLVKEKVERIVIMGGIEQAPDAEGWVQPDERAYNNHTDQAA EEEEEECCCHHHHHHHHCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHCCCHHHHH ARAFYRTAQEYGIPLRIVSKEAAYQAAVPPELYEALGQTGHPVGSYLMDIQRDALRHLWR HHHHHHHHHHHCCCEEEECHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH SIMEGQIARLDKRWFYDTFVARPGQDAPAFEAWRASAEASFDAVWESISRLNLYDPLTLL HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHE AAADGPAGMLFRPATVETRGTGGVELIGAGQVAAPADARNLMSALAKTALGS EECCCCCCCEECCCEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA