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The map label for this gene is xynB [H]

Identifier: 120612237

GI number: 120612237

Start: 3960624

End: 3961601

Strand: Reverse

Name: xynB [H]

Synonym: Aave_3590

Alternate gene names: 120612237

Gene position: 3961601-3960624 (Counterclockwise)

Preceding gene: 120612240

Following gene: 120612235

Centisome position: 74.01

GC content: 63.39

Gene sequence:

>978_bases
ATGAAAAAACTGACATCGTTTCTGTTCGCGCTGTCGCTCTCCTTCGCCGGCGCGGCCGGTGCCGTACCCATCGCTGCCGG
CAAGCAGCGTTTCCTGGGGTGCGCCTACAGCGCCCCGGAGGCGCGGGATTTCGACAAGTACTGGAACAAGGTCACGCCCG
AAAACGCCGGGAAATGGGGCAGCGTGGAGGCGGTTCGCGGCCGCATGGACTGGAGGGCTCTCGACGAGGCCTACAACTTC
GCCAAAAAGAACCACATGCCTTTCCAGTTCCACCAACTGATCTGGGGCAGCCAGCAGCCGACCTGGGTGCGGACGTTGCC
GCCGGCAGAGCAACGTGCCGCGATCGAGCATTGGTTCGCCTCGGTGGCGCAGCGCTACCCTGACATCGATTTCATGGAAG
TGGCCAACGAAATACTGCCGGGCCACAACCAGCCCGACGGCAGGTACCCTGACAGCGGCAATTACATGCAGGCGCTGGGT
GGTGCAGGTGCCTCCGGCTGGGACTGGGTTCTGCAGGCGTTCCGGCTGGCGCGGCATTACTTTCCCCGGTCCAAGCTGAT
GATCAATGACTTCGGCATCACTGGCAGCGCCAACGCCACCCGCCAATATCTCCGGATCATTCAGTTGCTGCAGCGCGAAC
ATCTGATCGATGGGATCGGCCTGCAGGAACATGCCTTCGAGACCGCTTACGCGCCCATGTCGCTGCAGCGCTCCAATCTC
GACATCCTGGCTTCCACCGGCGTGCCGATCTACGTCACCGAATTCGATCTGGACGGGGCGACCGATGCCCAACAGTTGGC
CAGCTACCAACGCATTTTCCCGATGTTCTGGGAACACCCGGGCGTACGCGGCGTGACCCTGTGGGGCTTCCGGCCCGGCC
TGTGGCGCGACGCCGAACGTGCCTATCTGGTCCGGCAGAACGGCATGGAGCGCCCGGCGCTGGTGTGGCTGCGCAACTAC
GTGGCGAGCAGGTCGTGA

Upstream 100 bases:

>100_bases
TCACGGGTTCGCCCCGAAGACGACAGGTGCGCATCCGCTTCGATATGGTGCCCTTGATCTCCCGCCCGTCGAGATCAATC
CCTACTATCGGAAGGTGCCC

Downstream 100 bases:

>100_bases
TGCGGTGCTCGGCGTGCTGAAGGGTTCAACGCGGTGTTTGAATCCGTGCGCAGGGTCAGATCTTCCGTCCGTTCCAGATC
CAGATGACTTTGCCCAGGAT

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKKLTSFLFALSLSFAGAAGAVPIAAGKQRFLGCAYSAPEARDFDKYWNKVTPENAGKWGSVEAVRGRMDWRALDEAYNF
AKKNHMPFQFHQLIWGSQQPTWVRTLPPAEQRAAIEHWFASVAQRYPDIDFMEVANEILPGHNQPDGRYPDSGNYMQALG
GAGASGWDWVLQAFRLARHYFPRSKLMINDFGITGSANATRQYLRIIQLLQREHLIDGIGLQEHAFETAYAPMSLQRSNL
DILASTGVPIYVTEFDLDGATDAQQLASYQRIFPMFWEHPGVRGVTLWGFRPGLWRDAERAYLVRQNGMERPALVWLRNY
VASRS

Sequences:

>Translated_325_residues
MKKLTSFLFALSLSFAGAAGAVPIAAGKQRFLGCAYSAPEARDFDKYWNKVTPENAGKWGSVEAVRGRMDWRALDEAYNF
AKKNHMPFQFHQLIWGSQQPTWVRTLPPAEQRAAIEHWFASVAQRYPDIDFMEVANEILPGHNQPDGRYPDSGNYMQALG
GAGASGWDWVLQAFRLARHYFPRSKLMINDFGITGSANATRQYLRIIQLLQREHLIDGIGLQEHAFETAYAPMSLQRSNL
DILASTGVPIYVTEFDLDGATDAQQLASYQRIFPMFWEHPGVRGVTLWGFRPGLWRDAERAYLVRQNGMERPALVWLRNY
VASRS
>Mature_325_residues
MKKLTSFLFALSLSFAGAAGAVPIAAGKQRFLGCAYSAPEARDFDKYWNKVTPENAGKWGSVEAVRGRMDWRALDEAYNF
AKKNHMPFQFHQLIWGSQQPTWVRTLPPAEQRAAIEHWFASVAQRYPDIDFMEVANEILPGHNQPDGRYPDSGNYMQALG
GAGASGWDWVLQAFRLARHYFPRSKLMINDFGITGSANATRQYLRIIQLLQREHLIDGIGLQEHAFETAYAPMSLQRSNL
DILASTGVPIYVTEFDLDGATDAQQLASYQRIFPMFWEHPGVRGVTLWGFRPGLWRDAERAYLVRQNGMERPALVWLRNY
VASRS

Specific function: Xylanase B contributes to hydrolyze hemicellulose, the major component of plant cell-walls [H]

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR005084
- InterPro:   IPR012291
- InterPro:   IPR018366
- InterPro:   IPR001919
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00553 CBM_2; PF03422 CBM_6; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 36880; Mature: 36880

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLTSFLFALSLSFAGAAGAVPIAAGKQRFLGCAYSAPEARDFDKYWNKVTPENAGKWG
CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEECCCCCCCCCHHHHHCCCCCCCCCCCC
SVEAVRGRMDWRALDEAYNFAKKNHMPFQFHQLIWGSQQPTWVRTLPPAEQRAAIEHWFA
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHH
SVAQRYPDIDFMEVANEILPGHNQPDGRYPDSGNYMQALGGAGASGWDWVLQAFRLARHY
HHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH
FPRSKLMINDFGITGSANATRQYLRIIQLLQREHLIDGIGLQEHAFETAYAPMSLQRSNL
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCC
DILASTGVPIYVTEFDLDGATDAQQLASYQRIFPMFWEHPGVRGVTLWGFRPGLWRDAER
EEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHH
AYLVRQNGMERPALVWLRNYVASRS
HHHHHHCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKLTSFLFALSLSFAGAAGAVPIAAGKQRFLGCAYSAPEARDFDKYWNKVTPENAGKWG
CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEECCCCCCCCCHHHHHCCCCCCCCCCCC
SVEAVRGRMDWRALDEAYNFAKKNHMPFQFHQLIWGSQQPTWVRTLPPAEQRAAIEHWFA
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHH
SVAQRYPDIDFMEVANEILPGHNQPDGRYPDSGNYMQALGGAGASGWDWVLQAFRLARHY
HHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH
FPRSKLMINDFGITGSANATRQYLRIIQLLQREHLIDGIGLQEHAFETAYAPMSLQRSNL
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCC
DILASTGVPIYVTEFDLDGATDAQQLASYQRIFPMFWEHPGVRGVTLWGFRPGLWRDAER
EEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHH
AYLVRQNGMERPALVWLRNYVASRS
HHHHHHCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2125205 [H]