Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is rpoZ
Identifier: 120612231
GI number: 120612231
Start: 3955019
End: 3955222
Strand: Direct
Name: rpoZ
Synonym: Aave_3584
Alternate gene names: 120612231
Gene position: 3955019-3955222 (Clockwise)
Preceding gene: 120612230
Following gene: 120612232
Centisome position: 73.89
GC content: 65.2
Gene sequence:
>204_bases ATGGCACGCATCACCGTTGAAGACTGCCTCGAGCACATCCCGAACCGTTTCCAGCTCGTCCTGGCAGCCACGTACCGCGC GCGCATGCTGAGCCAGGGCCACGCCCCGAAGATCGAGAGCCGCAACAAGCCCGCCGTGACGGCGCTGCGCGAGATCGCAG AAGGCAAGATCGGCCTGGAGATGCTCAAGAAGGTGCCCGGCTGA
Upstream 100 bases:
>100_bases CGTTGTTCACGCCCAGCGGCTCAAGTACGCAGCCCAGCGCCGGGCCCGGGCCGACACCTTCGAATCCCTCAATATCGTCT AGACCGCCAGGAGAATCCGC
Downstream 100 bases:
>100_bases TCCTGACGACCGCGCATCCAGCGCGCCTCCGATCAACAGCACCGCCAGGCGGTGCTTTTTTTTGCCTTCGGCCGGCTGGG CACGGGCACGCTACATTTCA
Product: DNA-directed RNA polymerase subunit omega
Products: NA
Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega
Number of amino acids: Translated: 67; Mature: 66
Protein sequence:
>67_residues MARITVEDCLEHIPNRFQLVLAATYRARMLSQGHAPKIESRNKPAVTALREIAEGKIGLEMLKKVPG
Sequences:
>Translated_67_residues MARITVEDCLEHIPNRFQLVLAATYRARMLSQGHAPKIESRNKPAVTALREIAEGKIGLEMLKKVPG >Mature_66_residues ARITVEDCLEHIPNRFQLVLAATYRARMLSQGHAPKIESRNKPAVTALREIAEGKIGLEMLKKVPG
Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
COG id: COG1758
COG function: function code K; DNA-directed RNA polymerase, subunit K/omega
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RNA polymerase subunit omega family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RPOZ_ACIAC (A1TT47)
Other databases:
- EMBL: CP000512 - RefSeq: YP_971909.1 - STRING: A1TT47 - GeneID: 4667628 - GenomeReviews: CP000512_GR - KEGG: aav:Aave_3584 - NMPDR: fig|397945.5.peg.3059 - eggNOG: COG1758 - HOGENOM: HBG742204 - OMA: NRFLLVM - ProtClustDB: PRK00392 - BioCyc: AAVE397945:AAVE_3584-MONOMER - HAMAP: MF_00366 - InterPro: IPR003716 - InterPro: IPR006110 - InterPro: IPR012293 - Gene3D: G3DSA:3.90.940.10 - TIGRFAMs: TIGR00690
Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega
EC number: =2.7.7.6
Molecular weight: Translated: 7469; Mature: 7338
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARITVEDCLEHIPNRFQLVLAATYRARMLSQGHAPKIESRNKPAVTALREIAEGKIGLE CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHH MLKKVPG HHHHCCC >Mature Secondary Structure ARITVEDCLEHIPNRFQLVLAATYRARMLSQGHAPKIESRNKPAVTALREIAEGKIGLE CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHH MLKKVPG HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA