Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yicC [C]
Identifier: 120612229
GI number: 120612229
Start: 3953425
End: 3954336
Strand: Direct
Name: yicC [C]
Synonym: Aave_3582
Alternate gene names: 120612229
Gene position: 3953425-3954336 (Clockwise)
Preceding gene: 120612223
Following gene: 120612230
Centisome position: 73.86
GC content: 69.3
Gene sequence:
>912_bases ATGGCAGTTTACAGCATGACCGGCTACGCGAGCGCCCAGCTCGAAGCCTCCGCCACCGATGCCGACAGCGGTGCCCGCCC CGCGCGCCTGGGTATCGAGATCCGCTCCGTCAACAGCCGCTTCCTGGATCTCTCCTTCCGCCTGCCCGATGAACTCCGGG CCCAGGAACCCGGCCTGCGCGCCCTCGTCACGCAGCATCTCAAGCGCGGCAAGGTGGAGGTGCGCGCCTCCATCGAATCG GAGGCCCAGGGCCTCATCGCTCCGCCCTCCGCGCGCATGCTGCAGCAACTCAACTCGGCGCAGGATTCCGTCCGCGCCTG GCTGCCGTCCGCCGCGCCACTGTCCGTGGCCGACGCGCTGCGCCTGTGCGCGGGTTCCGCGGCGTCCTCCGCGTCCTGGA GCCCCGAGGGCATCCAGGCCCTCGCCCAGCGGGCACTGGAAGACCTGGTGGCGGCGCGCGAGCGCGAGGGCAAGCGGCTC TCCGCCATGCTGCAGGACCGCCTGAAGCAACTGCGCGACCTGGCACGACAGGCCGCGCCCCTGGTGCCCCAGCTCGTGGA CCAGCAGCGCCAGCGTTTCCTGGAGCGCTGGAAGGAAGCCATGGCGCTGACCGAAGGCGTGCCGGTGCCCGAAGCCGCAC AGGACCGCGCCCTCGCGGAAGCCACCGCTTTCGCCATCCGCATCGACGTCGCGGAAGAGATCACGCGCCTCGACTCCCAC CTCGACGAGATCGAGCGCCTGCTGAAGAAGGGCGGGGAGATCGGCAAGCGGCTGGACTTCCTCATCCAGGAACTGCACCG CGAGGCCAATACCCTCGGCTCCAAGTCCGCCGCCATGGAACTGACCCGCATCAGCGTGGACATGAAAGTGCTCATCGAGC AGATGCGCGAGCAGGTCCAGAACATCGAGTGA
Upstream 100 bases:
>100_bases CTTGATTTTTGACATATTCGCGAAAAAACCTGGACGCGTCCCGATCGGGAAAAGGAACCCGGATAATCGCCGGATCGCAA GCAATCACCGAAAAAGTCCG
Downstream 100 bases:
>100_bases GCGATAATTCTCCTGTTTTGATAGCGGCCCGCGCACATCCCGTATGGACTATCCCGGAAATCTCTTCGTAGTGGCGGCGC CGAGCGGCGCAGGCAAGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MAVYSMTGYASAQLEASATDADSGARPARLGIEIRSVNSRFLDLSFRLPDELRAQEPGLRALVTQHLKRGKVEVRASIES EAQGLIAPPSARMLQQLNSAQDSVRAWLPSAAPLSVADALRLCAGSAASSASWSPEGIQALAQRALEDLVAAREREGKRL SAMLQDRLKQLRDLARQAAPLVPQLVDQQRQRFLERWKEAMALTEGVPVPEAAQDRALAEATAFAIRIDVAEEITRLDSH LDEIERLLKKGGEIGKRLDFLIQELHREANTLGSKSAAMELTRISVDMKVLIEQMREQVQNIE
Sequences:
>Translated_303_residues MAVYSMTGYASAQLEASATDADSGARPARLGIEIRSVNSRFLDLSFRLPDELRAQEPGLRALVTQHLKRGKVEVRASIES EAQGLIAPPSARMLQQLNSAQDSVRAWLPSAAPLSVADALRLCAGSAASSASWSPEGIQALAQRALEDLVAAREREGKRL SAMLQDRLKQLRDLARQAAPLVPQLVDQQRQRFLERWKEAMALTEGVPVPEAAQDRALAEATAFAIRIDVAEEITRLDSH LDEIERLLKKGGEIGKRLDFLIQELHREANTLGSKSAAMELTRISVDMKVLIEQMREQVQNIE >Mature_302_residues AVYSMTGYASAQLEASATDADSGARPARLGIEIRSVNSRFLDLSFRLPDELRAQEPGLRALVTQHLKRGKVEVRASIESE AQGLIAPPSARMLQQLNSAQDSVRAWLPSAAPLSVADALRLCAGSAASSASWSPEGIQALAQRALEDLVAAREREGKRLS AMLQDRLKQLRDLARQAAPLVPQLVDQQRQRFLERWKEAMALTEGVPVPEAAQDRALAEATAFAIRIDVAEEITRLDSHL DEIERLLKKGGEIGKRLDFLIQELHREANTLGSKSAAMELTRISVDMKVLIEQMREQVQNIE
Specific function: Unknown
COG id: COG1561
COG function: function code S; Uncharacterized stress-induced protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0701 family [H]
Homologues:
Organism=Escherichia coli, GI1790075, Length=305, Percent_Identity=35.0819672131148, Blast_Score=153, Evalue=2e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005229 - InterPro: IPR013551 - InterPro: IPR013527 [H]
Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]
EC number: NA
Molecular weight: Translated: 33362; Mature: 33230
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVYSMTGYASAQLEASATDADSGARPARLGIEIRSVNSRFLDLSFRLPDELRAQEPGLR CCEEECCCCCHHHCCCCCCCCCCCCCCHHHCEEEEECCCHHEEEEECCCHHHHCCCCCHH ALVTQHLKRGKVEVRASIESEAQGLIAPPSARMLQQLNSAQDSVRAWLPSAAPLSVADAL HHHHHHHHCCCHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH RLCAGSAASSASWSPEGIQALAQRALEDLVAAREREGKRLSAMLQDRLKQLRDLARQAAP HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC LVPQLVDQQRQRFLERWKEAMALTEGVPVPEAAQDRALAEATAFAIRIDVAEEITRLDSH HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDEIERLLKKGGEIGKRLDFLIQELHREANTLGSKSAAMELTRISVDMKVLIEQMREQVQ HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NIE CCC >Mature Secondary Structure AVYSMTGYASAQLEASATDADSGARPARLGIEIRSVNSRFLDLSFRLPDELRAQEPGLR CEEECCCCCHHHCCCCCCCCCCCCCCHHHCEEEEECCCHHEEEEECCCHHHHCCCCCHH ALVTQHLKRGKVEVRASIESEAQGLIAPPSARMLQQLNSAQDSVRAWLPSAAPLSVADAL HHHHHHHHCCCHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH RLCAGSAASSASWSPEGIQALAQRALEDLVAAREREGKRLSAMLQDRLKQLRDLARQAAP HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC LVPQLVDQQRQRFLERWKEAMALTEGVPVPEAAQDRALAEATAFAIRIDVAEEITRLDSH HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDEIERLLKKGGEIGKRLDFLIQELHREANTLGSKSAAMELTRISVDMKVLIEQMREQVQ HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NIE CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]