Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is lldD [H]
Identifier: 120612170
GI number: 120612170
Start: 3890917
End: 3892053
Strand: Reverse
Name: lldD [H]
Synonym: Aave_3519
Alternate gene names: 120612170
Gene position: 3892053-3890917 (Counterclockwise)
Preceding gene: 120612171
Following gene: 120612165
Centisome position: 72.71
GC content: 70.36
Gene sequence:
>1137_bases ATGATCATCTCTTCCACCGCCGACTACCGCGAAGCCGCCCGCAAGCGCCTGCCGCCCTTCCTCTTCCACTACATCGACGG CGGCGCCTATGCCGAGCAGACGCTGCGCCGCAACGTCGAGGACCTGGCCGCGGTCGCGCTGCGCCAGCGCGTGCTCAAGG ACATGAGCCGCCTCGACACCCGCGTCGAGCTGTTCGGCGAGCAGCTCTCCATCCCCGTGGCGCTGGCGCCCGTGGGCCTG ACGGGCATGTTCGCGCGACGCGGCGAGGTGCAGGCCGCGCGCGCGGCCGACCGGCACGGCGTGCCGTTCACCCTGTCCAG CGTCTCGGTCTGCCCGATCGAGGAGGTGGCACCGGAGCTCGGCCGGCCCATGTGGTTCCAGCTCTACGTGCTCAAGGACC GCGGCTTCATGAAGAACGCGCTGGAGCGCGCCCAGGCGGCGGGATGCACGGCGCTGGTGTTCACCGTGGACATGCCCGTG CCCGGCGCGCGCTACCGCGATGCGCATTCCGGCATGAGCGGCCCCAACGCCGCGCTGCGCCGCTACTGGCAGGCGGCCAT GCACCCGCGCTGGGCGTGGGATGTGGGCGCGCTGGGCCGCCCGCACGACCTGGGCAACATCTCCGCCTACCTCGGCAAGC CCACGGGCCTGGCCGACTACATGGGCTACCTGGGCGCCAATTTCGATCCCTCCATCTCGTGGAAGGACCTGGAATGGATC CGCGCGTTCTGGAAGGGGCCCATGCTCATCAAGGGCATCCTGGACCCGGAGGACGCGAAGGACGCCGTGCGTTTCGGCGC GGACGGCATCATCGTCTCCAACCACGGCGGCCGCCAGCTCGACGGCGTGCTCTCCTCGGCGCACGCGCTGCCGCCCATCG CCGATGCGGTGAAGGGCCGTATCAAGATCCTGGCCGACTCGGGCATCCGCAACGGCCTGGACGTGGTGCGCACCATCGCG CTCGGCGCCGACGCCGCGATGATCGGCCGCGCCTTCATCTACGCGCTGGCCGCGGCGGGCGAGGCCGGCGTGAAGCACGT GCTGGAGTTGCTCGAAAAGGAAATGCGCGTGGCGATGACGCTCACCAGCGTCGCGAAGGTCTCCGACATCACGGGCGACC TGCTGGTGAAGGCCTGA
Upstream 100 bases:
>100_bases ATGCGCAGGGCGCACGCCAATGTACCGGCGACCACCTCGAGCACGTGCGCACCACCATCCAGCGCCTGGACGCAGACCGC GCCCGCCGCGAGCGACAACC
Downstream 100 bases:
>100_bases CGGCACGGGGCGGTTGCACCGCCCGGCTCAGCCCTTCGGGAGCTCCAGCGTGAAGCGCACCTGGTGATTCTCGCAATGGC CCGTGGCGTCGCCGTGGTGG
Product: L-lactate dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MIISSTADYREAARKRLPPFLFHYIDGGAYAEQTLRRNVEDLAAVALRQRVLKDMSRLDTRVELFGEQLSIPVALAPVGL TGMFARRGEVQAARAADRHGVPFTLSSVSVCPIEEVAPELGRPMWFQLYVLKDRGFMKNALERAQAAGCTALVFTVDMPV PGARYRDAHSGMSGPNAALRRYWQAAMHPRWAWDVGALGRPHDLGNISAYLGKPTGLADYMGYLGANFDPSISWKDLEWI RAFWKGPMLIKGILDPEDAKDAVRFGADGIIVSNHGGRQLDGVLSSAHALPPIADAVKGRIKILADSGIRNGLDVVRTIA LGADAAMIGRAFIYALAAAGEAGVKHVLELLEKEMRVAMTLTSVAKVSDITGDLLVKA
Sequences:
>Translated_378_residues MIISSTADYREAARKRLPPFLFHYIDGGAYAEQTLRRNVEDLAAVALRQRVLKDMSRLDTRVELFGEQLSIPVALAPVGL TGMFARRGEVQAARAADRHGVPFTLSSVSVCPIEEVAPELGRPMWFQLYVLKDRGFMKNALERAQAAGCTALVFTVDMPV PGARYRDAHSGMSGPNAALRRYWQAAMHPRWAWDVGALGRPHDLGNISAYLGKPTGLADYMGYLGANFDPSISWKDLEWI RAFWKGPMLIKGILDPEDAKDAVRFGADGIIVSNHGGRQLDGVLSSAHALPPIADAVKGRIKILADSGIRNGLDVVRTIA LGADAAMIGRAFIYALAAAGEAGVKHVLELLEKEMRVAMTLTSVAKVSDITGDLLVKA >Mature_378_residues MIISSTADYREAARKRLPPFLFHYIDGGAYAEQTLRRNVEDLAAVALRQRVLKDMSRLDTRVELFGEQLSIPVALAPVGL TGMFARRGEVQAARAADRHGVPFTLSSVSVCPIEEVAPELGRPMWFQLYVLKDRGFMKNALERAQAAGCTALVFTVDMPV PGARYRDAHSGMSGPNAALRRYWQAAMHPRWAWDVGALGRPHDLGNISAYLGKPTGLADYMGYLGANFDPSISWKDLEWI RAFWKGPMLIKGILDPEDAKDAVRFGADGIIVSNHGGRQLDGVLSSAHALPPIADAVKGRIKILADSGIRNGLDVVRTIA LGADAAMIGRAFIYALAAAGEAGVKHVLELLEKEMRVAMTLTSVAKVSDITGDLLVKA
Specific function: Unknown
COG id: COG1304
COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FMN hydroxy acid dehydrogenase domain [H]
Homologues:
Organism=Homo sapiens, GI11068137, Length=373, Percent_Identity=35.1206434316354, Blast_Score=224, Evalue=9e-59, Organism=Homo sapiens, GI54234014, Length=378, Percent_Identity=35.1851851851852, Blast_Score=224, Evalue=1e-58, Organism=Homo sapiens, GI7705393, Length=378, Percent_Identity=35.1851851851852, Blast_Score=224, Evalue=1e-58, Organism=Escherichia coli, GI1790033, Length=377, Percent_Identity=78.5145888594164, Blast_Score=623, Evalue=1e-180, Organism=Caenorhabditis elegans, GI193208036, Length=371, Percent_Identity=35.0404312668464, Blast_Score=230, Evalue=8e-61, Organism=Caenorhabditis elegans, GI32566217, Length=284, Percent_Identity=34.5070422535211, Blast_Score=169, Evalue=3e-42, Organism=Saccharomyces cerevisiae, GI6323587, Length=379, Percent_Identity=27.9683377308707, Blast_Score=163, Evalue=4e-41, Organism=Drosophila melanogaster, GI78707188, Length=379, Percent_Identity=35.6200527704486, Blast_Score=215, Evalue=5e-56, Organism=Drosophila melanogaster, GI281363140, Length=379, Percent_Identity=35.6200527704486, Blast_Score=214, Evalue=5e-56, Organism=Drosophila melanogaster, GI78707190, Length=379, Percent_Identity=35.6200527704486, Blast_Score=214, Evalue=5e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR012133 - InterPro: IPR000262 - InterPro: IPR008259 - InterPro: IPR020920 [H]
Pfam domain/function: PF01070 FMN_dh [H]
EC number: =1.1.2.3 [H]
Molecular weight: Translated: 41017; Mature: 41017
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: PS00557 FMN_HYDROXY_ACID_DH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIISSTADYREAARKRLPPFLFHYIDGGAYAEQTLRRNVEDLAAVALRQRVLKDMSRLDT CCCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH RVELFGEQLSIPVALAPVGLTGMFARRGEVQAARAADRHGVPFTLSSVSVCPIEEVAPEL HHHHHHHHHCCCEEEECCCHHHHHHHCCCHHHHHHHCCCCCCEEECCCCCCCHHHHHHHH GRPMWFQLYVLKDRGFMKNALERAQAAGCTALVFTVDMPVPGARYRDAHSGMSGPNAALR CCCEEEEEEEEECCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHCCCCCCHHHHH RYWQAAMHPRWAWDVGALGRPHDLGNISAYLGKPTGLADYMGYLGANFDPSISWKDLEWI HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHH RAFWKGPMLIKGILDPEDAKDAVRFGADGIIVSNHGGRQLDGVLSSAHALPPIADAVKGR HHHHCCCEEEEECCCCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHCCE IKILADSGIRNGLDVVRTIALGADAAMIGRAFIYALAAAGEAGVKHVLELLEKEMRVAMT EEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LTSVAKVSDITGDLLVKA HHHHHHHHHCCCCCEECC >Mature Secondary Structure MIISSTADYREAARKRLPPFLFHYIDGGAYAEQTLRRNVEDLAAVALRQRVLKDMSRLDT CCCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH RVELFGEQLSIPVALAPVGLTGMFARRGEVQAARAADRHGVPFTLSSVSVCPIEEVAPEL HHHHHHHHHCCCEEEECCCHHHHHHHCCCHHHHHHHCCCCCCEEECCCCCCCHHHHHHHH GRPMWFQLYVLKDRGFMKNALERAQAAGCTALVFTVDMPVPGARYRDAHSGMSGPNAALR CCCEEEEEEEEECCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHCCCCCCHHHHH RYWQAAMHPRWAWDVGALGRPHDLGNISAYLGKPTGLADYMGYLGANFDPSISWKDLEWI HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHH RAFWKGPMLIKGILDPEDAKDAVRFGADGIIVSNHGGRQLDGVLSSAHALPPIADAVKGR HHHHCCCEEEEECCCCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHCCE IKILADSGIRNGLDVVRTIALGADAAMIGRAFIYALAAAGEAGVKHVLELLEKEMRVAMT EEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LTSVAKVSDITGDLLVKA HHHHHHHHHCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA