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The map label for this gene is pel [H]

Identifier: 120612087

GI number: 120612087

Start: 3793109

End: 3794623

Strand: Direct

Name: pel [H]

Synonym: Aave_3434

Alternate gene names: 120612087

Gene position: 3793109-3794623 (Clockwise)

Preceding gene: 120612084

Following gene: 120612088

Centisome position: 70.86

GC content: 68.91

Gene sequence:

>1515_bases
ATGGCAGCCGCTGCCGCGGCGGCGGCGGCGCTGATGTGCGCCTGCGGCGGCGAGAGTGTGACCGCGCAGGCTGCGGCCGC
GCCCGCAGGCAGCATCGATTCGCTGGGCGCGACGGGCTGGGCCTCCCATGGCACGCCGACCACCGGTGGACAGGGCGCCG
CGGCAGAAAGGACCTACACGGTGGCAAACCGCAACGAACTCATCCAGGCGCTCTACGGCAACACCGCCGTGATCGCACCG
GACGGTTCGGTGCAGGGGACGCCGGACAAGGCGCCCAAGGTCATCCGCATCCGGGGCACCATCGACCTGAACGTGGACGG
CCAGCTGCGCCCTTACACGCCGGACCGCTACGTGGCGGGCTCCTGCGCATCGTCGGTGCACGGCTATGCGTCCCAGGCCA
GCCTCTGGTCGGACTACCTCGCGGCCTACCGCCCGGGCGCCTGGGGCAATGCGCGAACGGTGAGCGGCAAGCCGGAAGAC
GCGCGGGCCTGCGCGGCGGAACTGCAAAGGCGCGTCGTGACGATCAGCGTGCCGGACAACACGTCCCTGCTGGGCATCGG
CACGGACGCGAAGATCCTGCACGGCAACCTCATGCTGGGCACGCCGGATGCGCCGGTCGCCAACATCGTGATCCGCAACA
TCACCTTCGAAGACGCATTCGACGACTTCCCCCAATGGGACCCGACGGACTCCTCCGACGGCCGGTGGAACTCGGAGTAC
GACCTCATTTCCGTCGCCCATGCCAGCCACGTGTGGATCGACCACAACACCTTCAGCGACGGCGACCGCCACGACCATGC
CTTCCCTTCCGTGTGGCACGAGACGGTGCACGGCACGGACTACAGCGGCGGCGATTTCAAGGTGCAGCACCATGACGGCC
TCGTGGACGTGACCCGGCACGGCAACTACGTCACCCTGTCGAACAACCATTTCCACGACCACGACAAGGCATTCCTGATC
GGTGGCACCGATGTCCCCGGCGCGGACAGCGGCAATCCGCGCATGCTGAAGGTGACGTTCCACGGCAACCATTTCCAGAA
CCTGCGGCAGCGCCAGGCCCGGGTCCGCTACGGGATGGTGCACCTCTACAACAACTACTACGAGAACACACGGGACGCCT
CGGCCGACTACCCCTGGCTCGCCGGCATGACGCTGGGCCAGAGCGGCAAGGTGCATGCCGAGAACAACGTGGTATCGCTC
GCCGGCCCGGACCGGCCCGCGCGGCCTGCCGACGTGGCGAACGCCCGGATCTCGGCGGCACGGACGCAGGACTGCGCGGC
GCTGTTTTCGGCCAGCGAGTGCGCCTCCACGTTCTACGACAGCGGCACGGTGCTCAACGGCGGGCCCGCGGACCTGACGG
CCGCCGTGCGCTGGTCGTCGGCACTGGCGGCCGCCCCTGCCTGGAAGCCATCGGACTTCTACGACTACACGCTGGAGGAC
ACCGCGGACCTGGCGGCGCGCATCACCGCCCGTGCGGGAGCGGGCAAGCTCGAGGGTCCCGCAGAACCACGCTGA

Upstream 100 bases:

>100_bases
CGCGCCAGGCACTGCCGGCATTAGATTGGGCGGCTATGCACCATGCACCCGTACGACGACCGCGCGCGACTTCGCTGCTT
CCGCCCCCCGGGCGCTGCGC

Downstream 100 bases:

>100_bases
CGCCGGGCCCCGGGAGTGCCCGGGTGGCTGCAGAGCAAGCGCACAATCCGGCGATGCACAGTCCCTCCCACCCCGATGGC
GAACTGCCTCCGCTGCAGCC

Product: Pectate lyase/Amb allergen

Products: NA

Alternate protein names: PL [H]

Number of amino acids: Translated: 504; Mature: 503

Protein sequence:

>504_residues
MAAAAAAAAALMCACGGESVTAQAAAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYTVANRNELIQALYGNTAVIAP
DGSVQGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAGSCASSVHGYASQASLWSDYLAAYRPGAWGNARTVSGKPED
ARACAAELQRRVVTISVPDNTSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFPQWDPTDSSDGRWNSEY
DLISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGLVDVTRHGNYVTLSNNHFHDHDKAFLI
GGTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMVHLYNNYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSL
AGPDRPARPADVANARISAARTQDCAALFSASECASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLED
TADLAARITARAGAGKLEGPAEPR

Sequences:

>Translated_504_residues
MAAAAAAAAALMCACGGESVTAQAAAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYTVANRNELIQALYGNTAVIAP
DGSVQGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAGSCASSVHGYASQASLWSDYLAAYRPGAWGNARTVSGKPED
ARACAAELQRRVVTISVPDNTSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFPQWDPTDSSDGRWNSEY
DLISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGLVDVTRHGNYVTLSNNHFHDHDKAFLI
GGTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMVHLYNNYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSL
AGPDRPARPADVANARISAARTQDCAALFSASECASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLED
TADLAARITARAGAGKLEGPAEPR
>Mature_503_residues
AAAAAAAAALMCACGGESVTAQAAAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYTVANRNELIQALYGNTAVIAPD
GSVQGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAGSCASSVHGYASQASLWSDYLAAYRPGAWGNARTVSGKPEDA
RACAAELQRRVVTISVPDNTSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFPQWDPTDSSDGRWNSEYD
LISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGLVDVTRHGNYVTLSNNHFHDHDKAFLIG
GTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMVHLYNNYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSLA
GPDRPARPADVANARISAARTQDCAALFSASECASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLEDT
ADLAARITARAGAGKLEGPAEPR

Specific function: Produces unsaturated products from polygalacturonate [H]

COG id: COG3866

COG function: function code G; Pectate lyase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002022
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00544 Pec_lyase_C [H]

EC number: =4.2.2.2 [H]

Molecular weight: Translated: 53532; Mature: 53401

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAAAAAAALMCACGGESVTAQAAAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYT
CCHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
VANRNELIQALYGNTAVIAPDGSVQGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAG
ECCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCC
SCASSVHGYASQASLWSDYLAAYRPGAWGNARTVSGKPEDARACAAELQRRVVTISVPDN
HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHCEEEEEECCCC
TSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFPQWDPTDSSDGRWNSEY
CEEEEECCCCEEEECEEEEECCCCCEEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCC
DLISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGLVDVTRH
CEEEEEECEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEC
GNYVTLSNNHFHDHDKAFLIGGTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMV
CCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
HLYNNYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSLAGPDRPARPADVANARISAA
EEHHHHHCCCCCCCCCCCEEECEEECCCCCEEECCCEEEECCCCCCCCCCHHHCCHHHHH
RTQDCAALFSASECASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLED
HHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEHHHHHHCCCCCCCCCCEEEECCC
TADLAARITARAGAGKLEGPAEPR
HHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AAAAAAAAALMCACGGESVTAQAAAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYT
CHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
VANRNELIQALYGNTAVIAPDGSVQGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAG
ECCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCC
SCASSVHGYASQASLWSDYLAAYRPGAWGNARTVSGKPEDARACAAELQRRVVTISVPDN
HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHCEEEEEECCCC
TSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFPQWDPTDSSDGRWNSEY
CEEEEECCCCEEEECEEEEECCCCCEEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCC
DLISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGLVDVTRH
CEEEEEECEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEC
GNYVTLSNNHFHDHDKAFLIGGTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMV
CCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
HLYNNYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSLAGPDRPARPADVANARISAA
EEHHHHHCCCCCCCCCCCEEECEEECCCCCEEECCCEEEECCCCCCCCCCHHHCCHHHHH
RTQDCAALFSASECASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLED
HHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEHHHHHHCCCCCCCCCCEEEECCC
TADLAARITARAGAGKLEGPAEPR
HHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8262178; 9272861; 9384377; 10658653; 2126210; 7634076 [H]