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The map label for this gene is yagA [H]

Identifier: 120612077

GI number: 120612077

Start: 3782046

End: 3782993

Strand: Direct

Name: yagA [H]

Synonym: Aave_3424

Alternate gene names: 120612077

Gene position: 3782046-3782993 (Clockwise)

Preceding gene: 120612076

Following gene: 120612080

Centisome position: 70.66

GC content: 66.46

Gene sequence:

>948_bases
ATGAACAGTCATAAGCATGCGCGATTGACCCGCGCAGGTCGAGCCCTTCTGGTCGACAGAGTGCTCCAGCAGAACTGGAC
GATGCGCCAAGCCAGCGAAGCCGCAGGCGTGAGCCTGCGCACCGGCTACAAGTGGATGGCCCGCTTTCGCAACGAAGGCC
CCGATGGCTTGCTCGACCGCAGCTCCCGCCCGCACCGCAGCCCCCAGGCCTGCCCACCCGAGCAGGTCCAGCTGTTCGAA
CAGCAGCGCCGCCAGCGCTTGCCCCTTTGGCGCATCGCCCGTGAGACCGGCCGCAGTCTGGCGACCGTAGCGCGCCACAT
GGACCGCATCGGCCTGAGCCGGCTCGCATCGCTGGAGCCACCGCAGCCCGTGCGTCGCTACGAGCGCGCCAGCCCGGGCG
AACTGCTGCACATCGACACCAAGCGGCTCGGCCGCATCCACGGCGTGGGCCACCGCATCACCGGCGACCGAACCCAGAAC
CGCAACCGTGGCATCGGTTGGGATGCGGTGCATCTGGCCATCGACGACCACTCCCGCGTGTCCTTCGCCCAGGTCCTGGC
CGACGAGACAGCGCTGAGTTGCGTGCAGTTCCTGCGAGACGCGGTGGCCTACTACGCCAACATCGGCGTACGCATCGAGC
GCGTCATGACCGACAACGGCTCTGGCTACAAAAACGCCTTCCGCGCGGCCTGCGAGGAATTGGGCATCCGCCACATCCGC
ACGCGGCCCTATACGCCCAAGACCAACGGCAAGGCCGAGCGATTCGTACAGACCAGCCTGCGGGAGTGGGCCTATGCCAG
ACCCTACGAAAGCTCAGCCCAACGCACGGCTGCCCTGCAGCCCTTCATTGACGGCTACAACTGGTGCCGGCCACACTCCG
CGCTCGGCCATCAGCCTCCCATCACACGCATTCCGGGTGTGAACAACCTCGTGAGACTCAACATCTAG

Upstream 100 bases:

>100_bases
ATGGCGCCCGCTAGCTGTGATGTCTCAATAGGTTGTTCATCCAGGCCCGACCTGGGAAGCTGTGGTTACCAGGCCCCAGC
AACTCAGGACAGGACACCGG

Downstream 100 bases:

>100_bases
CGGCAGGCCGGCGGCGCCGGGCCTTGCAGGGCATCACTGGCGCACCACGTCGGCGCCCTGCGGGGGCTTGAACTCGAAAG
TGGAGGCCGGCAGGGAAGCG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MNSHKHARLTRAGRALLVDRVLQQNWTMRQASEAAGVSLRTGYKWMARFRNEGPDGLLDRSSRPHRSPQACPPEQVQLFE
QQRRQRLPLWRIARETGRSLATVARHMDRIGLSRLASLEPPQPVRRYERASPGELLHIDTKRLGRIHGVGHRITGDRTQN
RNRGIGWDAVHLAIDDHSRVSFAQVLADETALSCVQFLRDAVAYYANIGVRIERVMTDNGSGYKNAFRAACEELGIRHIR
TRPYTPKTNGKAERFVQTSLREWAYARPYESSAQRTAALQPFIDGYNWCRPHSALGHQPPITRIPGVNNLVRLNI

Sequences:

>Translated_315_residues
MNSHKHARLTRAGRALLVDRVLQQNWTMRQASEAAGVSLRTGYKWMARFRNEGPDGLLDRSSRPHRSPQACPPEQVQLFE
QQRRQRLPLWRIARETGRSLATVARHMDRIGLSRLASLEPPQPVRRYERASPGELLHIDTKRLGRIHGVGHRITGDRTQN
RNRGIGWDAVHLAIDDHSRVSFAQVLADETALSCVQFLRDAVAYYANIGVRIERVMTDNGSGYKNAFRAACEELGIRHIR
TRPYTPKTNGKAERFVQTSLREWAYARPYESSAQRTAALQPFIDGYNWCRPHSALGHQPPITRIPGVNNLVRLNI
>Mature_315_residues
MNSHKHARLTRAGRALLVDRVLQQNWTMRQASEAAGVSLRTGYKWMARFRNEGPDGLLDRSSRPHRSPQACPPEQVQLFE
QQRRQRLPLWRIARETGRSLATVARHMDRIGLSRLASLEPPQPVRRYERASPGELLHIDTKRLGRIHGVGHRITGDRTQN
RNRGIGWDAVHLAIDDHSRVSFAQVLADETALSCVQFLRDAVAYYANIGVRIERVMTDNGSGYKNAFRAACEELGIRHIR
TRPYTPKTNGKAERFVQTSLREWAYARPYESSAQRTAALQPFIDGYNWCRPHSALGHQPPITRIPGVNNLVRLNI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=313, Percent_Identity=29.7124600638978, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 35914; Mature: 35914

Theoretical pI: Translated: 11.44; Mature: 11.44

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSHKHARLTRAGRALLVDRVLQQNWTMRQASEAAGVSLRTGYKWMARFRNEGPDGLLDR
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC
SSRPHRSPQACPPEQVQLFEQQRRQRLPLWRIARETGRSLATVARHMDRIGLSRLASLEP
CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC
PQPVRRYERASPGELLHIDTKRLGRIHGVGHRITGDRTQNRNRGIGWDAVHLAIDDHSRV
CHHHHHHHCCCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHH
SFAQVLADETALSCVQFLRDAVAYYANIGVRIERVMTDNGSGYKNAFRAACEELGIRHIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHCHHHHC
TRPYTPKTNGKAERFVQTSLREWAYARPYESSAQRTAALQPFIDGYNWCRPHSALGHQPP
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
ITRIPGVNNLVRLNI
CCCCCCCCCEEEECC
>Mature Secondary Structure
MNSHKHARLTRAGRALLVDRVLQQNWTMRQASEAAGVSLRTGYKWMARFRNEGPDGLLDR
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC
SSRPHRSPQACPPEQVQLFEQQRRQRLPLWRIARETGRSLATVARHMDRIGLSRLASLEP
CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC
PQPVRRYERASPGELLHIDTKRLGRIHGVGHRITGDRTQNRNRGIGWDAVHLAIDDHSRV
CHHHHHHHCCCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHH
SFAQVLADETALSCVQFLRDAVAYYANIGVRIERVMTDNGSGYKNAFRAACEELGIRHIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHCHHHHC
TRPYTPKTNGKAERFVQTSLREWAYARPYESSAQRTAALQPFIDGYNWCRPHSALGHQPP
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
ITRIPGVNNLVRLNI
CCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]