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The map label for this gene is rbfA

Identifier: 120612036

GI number: 120612036

Start: 3736996

End: 3737373

Strand: Reverse

Name: rbfA

Synonym: Aave_3382

Alternate gene names: 120612036

Gene position: 3737373-3736996 (Counterclockwise)

Preceding gene: 120612037

Following gene: 120612035

Centisome position: 69.82

GC content: 63.49

Gene sequence:

>378_bases
ATGGCTGCTAAAAAATCCTCCACGCCCAACCGCGGCTTCAAGGTCGCGGACCAGATCCAGCGCGATCTGACCGAGCTGAT
CCGCGAGTTGAAGGACCCGCGCATCGGCATGGTCACGCTGCAGGCCGTGGAAGTGACGCCCGACTACGCGCATGCGAAGG
TGTTCTTCAGCGTGCTCGTGGGCGACGCCGACGCGACGCAGGATGCGCTGAACCAGGCCGCGGGCTTCCTGCGCAACGGC
CTGTTCAAGCGCCTGCACATCCACACCGTGCCGACGCTGCACTTCATGTTCGACCGCACCACCGAACGTGCTTCGGACAT
GAATGCACTGATCGCGCGCGCCGTGGCTTCCCGTTCCAAAGACGACGACGAAGCATGA

Upstream 100 bases:

>100_bases
TTCTTCGAGATCAAGGAAATCGCAAGGACCTTGTGATGCACCCCCTGAGTCGCTTCGCGCCTTTCCCCTCGAGGGTGCGC
GACGCGATAGGGGCAACGAT

Downstream 100 bases:

>100_bases
CCGCACGCGCTCCCCGCATCCGGGTGCAGCGGCGCCCGGTGCACGGAGTGCTTCTGCTCGACAAGCCCCTTGGCCTTTCC
AGCAACGATGCGTTGCAGAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MAAKKSSTPNRGFKVADQIQRDLTELIRELKDPRIGMVTLQAVEVTPDYAHAKVFFSVLVGDADATQDALNQAAGFLRNG
LFKRLHIHTVPTLHFMFDRTTERASDMNALIARAVASRSKDDDEA

Sequences:

>Translated_125_residues
MAAKKSSTPNRGFKVADQIQRDLTELIRELKDPRIGMVTLQAVEVTPDYAHAKVFFSVLVGDADATQDALNQAAGFLRNG
LFKRLHIHTVPTLHFMFDRTTERASDMNALIARAVASRSKDDDEA
>Mature_124_residues
AAKKSSTPNRGFKVADQIQRDLTELIRELKDPRIGMVTLQAVEVTPDYAHAKVFFSVLVGDADATQDALNQAAGFLRNGL
FKRLHIHTVPTLHFMFDRTTERASDMNALIARAVASRSKDDDEA

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=119, Percent_Identity=36.1344537815126, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_ACIAC (A1TSK2)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_971714.1
- ProteinModelPortal:   A1TSK2
- SMR:   A1TSK2
- STRING:   A1TSK2
- GeneID:   4667762
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_3382
- NMPDR:   fig|397945.5.peg.2889
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   FLRNGLF
- PhylomeDB:   A1TSK2
- ProtClustDB:   PRK00521
- BioCyc:   AAVE397945:AAVE_3382-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13885; Mature: 13754

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKKSSTPNRGFKVADQIQRDLTELIRELKDPRIGMVTLQAVEVTPDYAHAKVFFSVLV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHH
GDADATQDALNQAAGFLRNGLFKRLHIHTVPTLHFMFDRTTERASDMNALIARAVASRSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DDDEA
CCCCC
>Mature Secondary Structure 
AAKKSSTPNRGFKVADQIQRDLTELIRELKDPRIGMVTLQAVEVTPDYAHAKVFFSVLV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHH
GDADATQDALNQAAGFLRNGLFKRLHIHTVPTLHFMFDRTTERASDMNALIARAVASRSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DDDEA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA