Click here to switch to the map view.

The map label for this gene is 120612031

Identifier: 120612031

GI number: 120612031

Start: 3730218

End: 3731102

Strand: Direct

Name: 120612031

Synonym: Aave_3377

Alternate gene names: NA

Gene position: 3730218-3731102 (Clockwise)

Preceding gene: 120612030

Following gene: 120612033

Centisome position: 69.69

GC content: 74.35

Gene sequence:

>885_bases
ATGACCGACCCGCGCACCCCCTGCCCCGACGGCGCTCTGCATCGCGCCCCATCCGGTGCCCCGGATACCGGTCTGGATGA
CGACCGCCTGCACGCGCTGGTGGATGGCCGTCTCCCGGACGACGAAGCACAGGCGCTGCGCCGCCGGCTGGCGGACGACC
CTTGCACCCGGGAGCGCGTGCGAGCCTGGGAAGCCCAGCGTGCGCAGCTGCGCGCGCTGCATGCGGACTGGACGCAGGCG
CCGGTTCCACCGCCGCTCCTGCAGGCGGCGCGGGCCTTGCGCAACCGCCGCCTGCAGGTGGCGCGGGCCTGGCGCATGGC
CGGTCTTGCGGCCTCGCTGGCGCTCGCCTTCGGGCTGGGGTGGACGCTGCACGGCACGGTTTCGCCCGGCGATCCGGCCT
CCGCCACGCTGGCACGCTCGGCACCCTCGCCATTGCCGCCGACCCAGCGTTTCGCGCTGCAGGCCGCCGCGGCCCACGCG
GTGTACCAGCCCGAGCAGCGCCATCCGGTGGAGGTCGGCGCAGCACAGCAGGAACATCTGGTGCAGTGGCTCTCCAAACG
CCTGGGCAAGCCGCTGCGCATTCCCGACCTGCAGCCCCAGGGCTATGAACTGGTGGGCGGGCGCCTGCTGCCGGGCGATG
CGGGACCGGGCGGCGCCACCGGCGCGCGGGCGCAGTTCATGTACCAGAACGCCGCGGGGCAGCGCGTCACGCTGTACCTC
GGCGCGCTGCCCGCGGCCCCCGCGGAAACCGCCTTCCGTTACGAAGGCGACGGCCCCGTGCCCAGCTTCTACTGGGTGGA
GGACGGCTTCGGCTACGCGTTGAGCGGCCCGCTGCCCCGCGAGGCGCTGCTGGCCATCGCCACGGCCGTCCATCCGCAGT
TGTGA

Upstream 100 bases:

>100_bases
CAGGCCCGCGCACCCGGCGCGGCGCCGGAGACACGGCAGCCGCCTTCCCCGCCTGGAGCGCCGCGGCTGCGGCGGCTGAA
ATGACGATGGACCGCAGGCC

Downstream 100 bases:

>100_bases
TTCACCGCAGGCCGGCCAGCGGATGGGAATGCGCGGGCCAGGGACTGTCGAAGAAAGGCTGCCACATCGCGGGCGTGACG
TCCTCGATGCGCGCCGGGTT

Product: putative transmembrane anti-sigma factor

Products: NA

Alternate protein names: Transmembrane Transcriptional Regulator; Transmembrane Regulator; Anti-Sigma Factor; Transmembrane Protein; PrtR Transmembrane Transcriptional Regulator; Sigma Factor Regulator PrtR; Transmembrane Regulator PrtR; Transmembrane Transcription Regulator

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTDPRTPCPDGALHRAPSGAPDTGLDDDRLHALVDGRLPDDEAQALRRRLADDPCTRERVRAWEAQRAQLRALHADWTQA
PVPPPLLQAARALRNRRLQVARAWRMAGLAASLALAFGLGWTLHGTVSPGDPASATLARSAPSPLPPTQRFALQAAAAHA
VYQPEQRHPVEVGAAQQEHLVQWLSKRLGKPLRIPDLQPQGYELVGGRLLPGDAGPGGATGARAQFMYQNAAGQRVTLYL
GALPAAPAETAFRYEGDGPVPSFYWVEDGFGYALSGPLPREALLAIATAVHPQL

Sequences:

>Translated_294_residues
MTDPRTPCPDGALHRAPSGAPDTGLDDDRLHALVDGRLPDDEAQALRRRLADDPCTRERVRAWEAQRAQLRALHADWTQA
PVPPPLLQAARALRNRRLQVARAWRMAGLAASLALAFGLGWTLHGTVSPGDPASATLARSAPSPLPPTQRFALQAAAAHA
VYQPEQRHPVEVGAAQQEHLVQWLSKRLGKPLRIPDLQPQGYELVGGRLLPGDAGPGGATGARAQFMYQNAAGQRVTLYL
GALPAAPAETAFRYEGDGPVPSFYWVEDGFGYALSGPLPREALLAIATAVHPQL
>Mature_293_residues
TDPRTPCPDGALHRAPSGAPDTGLDDDRLHALVDGRLPDDEAQALRRRLADDPCTRERVRAWEAQRAQLRALHADWTQAP
VPPPLLQAARALRNRRLQVARAWRMAGLAASLALAFGLGWTLHGTVSPGDPASATLARSAPSPLPPTQRFALQAAAAHAV
YQPEQRHPVEVGAAQQEHLVQWLSKRLGKPLRIPDLQPQGYELVGGRLLPGDAGPGGATGARAQFMYQNAAGQRVTLYLG
ALPAAPAETAFRYEGDGPVPSFYWVEDGFGYALSGPLPREALLAIATAVHPQL

Specific function: Unknown

COG id: COG5662

COG function: function code K; Predicted transmembrane transcriptional regulator (anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31545; Mature: 31414

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPRTPCPDGALHRAPSGAPDTGLDDDRLHALVDGRLPDDEAQALRRRLADDPCTRERV
CCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHEECCCCCCHHHHHHHHHHCCCCCHHHHH
RAWEAQRAQLRALHADWTQAPVPPPLLQAARALRNRRLQVARAWRMAGLAASLALAFGLG
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WTLHGTVSPGDPASATLARSAPSPLPPTQRFALQAAAAHAVYQPEQRHPVEVGAAQQEHL
EEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
VQWLSKRLGKPLRIPDLQPQGYELVGGRLLPGDAGPGGATGARAQFMYQNAAGQRVTLYL
HHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCCCCCCCCHHHHHEECCCCCCEEEEEE
GALPAAPAETAFRYEGDGPVPSFYWVEDGFGYALSGPLPREALLAIATAVHPQL
ECCCCCCCCCCEEECCCCCCCCEEEEECCCCEEECCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TDPRTPCPDGALHRAPSGAPDTGLDDDRLHALVDGRLPDDEAQALRRRLADDPCTRERV
CCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHEECCCCCCHHHHHHHHHHCCCCCHHHHH
RAWEAQRAQLRALHADWTQAPVPPPLLQAARALRNRRLQVARAWRMAGLAASLALAFGLG
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WTLHGTVSPGDPASATLARSAPSPLPPTQRFALQAAAAHAVYQPEQRHPVEVGAAQQEHL
EEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
VQWLSKRLGKPLRIPDLQPQGYELVGGRLLPGDAGPGGATGARAQFMYQNAAGQRVTLYL
HHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCCCCCCCCHHHHHEECCCCCCEEEEEE
GALPAAPAETAFRYEGDGPVPSFYWVEDGFGYALSGPLPREALLAIATAVHPQL
ECCCCCCCCCCEEECCCCCCCCEEEEECCCCEEECCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA